RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ATMINO43313 823 aaPredicted RBP18.82■□□□□ 0.6
SYNE3-202ENST00000553340 GAS7O60861 476 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 TCP10Q12799 353 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 MYO1EQ12965 1108 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 TMEM179Q6ZVK1 233 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 ZNF564Q8TBZ8 553 aaPredicted RBP18.82■□□□□ 0.6
SYNE3-202ENST00000553340 PCDHB18PQ96TA0 734 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 NUP85Q9BW27 656 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 BCS1LQ9Y276 419 aa18.82■□□□□ 0.6
SYNE3-202ENST00000553340 TULP1O00294 542 aaPredicted RBP18.81■□□□□ 0.6
SYNE3-202ENST00000553340 COPS2P61201 443 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 PPP3CAQ08209 521 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 RRP1BQ14684 758 aaKnown RBP18.81■□□□□ 0.6
SYNE3-202ENST00000553340 BANK1Q8NDB2 785 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 EPS8L1Q8TE68 723 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 NSMCE1Q8WV22 266 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 SLC5A5Q92911 643 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 SLCO2A1Q92959 643 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 STRA6Q9BX79 667 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 PLVAPQ9BX97 442 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 O00370 1275 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 SGPL1O95470 568 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 BMP3P12645 472 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 ALADP13716 330 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 GCLMP48507 274 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 SLC8A3P57103 927 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 BNIP1Q12981 228 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 EPC2Q52LR7 807 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 VSTM1Q6UX27 236 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 SP8Q8IXZ3 490 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 KLHL29Q96CT2 875 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 IFT74Q96LB3 600 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 KCNK9Q9NPC2 374 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 ARL2BPQ9Y2Y0 163 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 L3MBTL1Q9Y468 752 aa18.81■□□□□ 0.6
SYNE3-202ENST00000553340 SPATA31A6Q5VVP1 1343 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 TAF1LQ8IZX4 1826 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 ANP32DO95626 131 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 CHRNB2P17787 502 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 ALDH5A1P51649 535 aaPredicted RBP18.8■□□□□ 0.6
SYNE3-202ENST00000553340 KRT17Q04695 432 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 NOP9Q86U38 636 aaKnown RBP18.8■□□□□ 0.6
SYNE3-202ENST00000553340 AGAP11Q8TF27 550 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 BTBD6Q96KE9 485 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 PCIF1Q9H4Z3 704 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 C15orf41Q9Y2V0 281 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 ARHGEF35A5YM69 484 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 K7ENM7 598 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 IGF2BP3O00425 579 aaKnown RBP eCLIP18.8■□□□□ 0.6
SYNE3-202ENST00000553340 HIP1RO75146 1068 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 ITIH2P19823 946 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 NAA25Q14CX7 972 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 SPATA21Q7Z572 469 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 ANKRD42Q8N9B4 389 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 CKAP2Q8WWK9 683 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 POP1Q99575 1024 aaKnown RBP18.8■□□□□ 0.6
SYNE3-202ENST00000553340 AAASQ9NRG9 546 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 WRAP73Q9P2S5 460 aaPredicted RBP18.8■□□□□ 0.6
SYNE3-202ENST00000553340 ASIC3Q9UHC3 531 aa18.8■□□□□ 0.6
SYNE3-202ENST00000553340 NOCTQ9UK39 431 aaKnown RBP18.8■□□□□ 0.6
SYNE3-202ENST00000553340 DDTLA6NHG4 134 aaPredicted RBP18.79■□□□□ 0.6
SYNE3-202ENST00000553340 PPEF1O14829 653 aaPredicted RBP18.79■□□□□ 0.6
SYNE3-202ENST00000553340 CYP1A2P05177 515 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 DLATP10515 647 aaKnown RBP18.79■□□□□ 0.6
SYNE3-202ENST00000553340 CREB1P16220 341 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 CACNB3P54284 484 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 CPNE8Q86YQ8 564 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 L3MBTL3Q96JM7 780 aaPredicted RBP18.79■□□□□ 0.6
SYNE3-202ENST00000553340 TMEM206Q9H813 350 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 NOP53Q9NZM5 478 aaKnown RBP18.79■□□□□ 0.6
SYNE3-202ENST00000553340 UVRAGQ9P2Y5 699 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 MYH11P35749 1972 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 ADAMTSL1Q8N6G6 1762 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 GJB6O95452 261 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 CFBP00751 764 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 CRKP46108 304 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 SGO2Q562F6 1265 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 TATDN1Q6P1N9 297 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 FAM71AQ8IYT1 594 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 MAB21L3Q8N8X9 362 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 KAT5Q92993 513 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 ZNF653Q96CK0 615 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 WDR11Q9BZH6 1224 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 GTF3C4Q9UKN8 822 aa18.79■□□□□ 0.6
SYNE3-202ENST00000553340 LTBP1Q14766 1721 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.78■□□□□ 0.6
SYNE3-202ENST00000553340 TP73O15350 636 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 CLDN3O15551 220 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 TTC4O95801 387 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 ADRA2BP18089 450 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 CCND1P24385 295 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 PSEN1P49768 467 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 RASA3Q14644 834 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 DOK7Q18PE1 504 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 ABCB5Q2M3G0 1257 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 TEX2Q8IWB9 1127 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 C1orf54Q8WWF1 131 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 THOC1Q96FV9 657 aaKnown RBP18.78■□□□□ 0.6
SYNE3-202ENST00000553340 RXFP1Q9HBX9 757 aa18.78■□□□□ 0.6
SYNE3-202ENST00000553340 FSCN2O14926 492 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms