RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PRKD2Q9BZL6 878 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 SLKQ9H2G2 1235 aaPredicted RBP10.13□□□□□ -0.79
SYNE2-209ENST00000553308 NXF3Q9H4D5 531 aaKnown RBP10.13□□□□□ -0.79
SYNE2-209ENST00000553308 PLEKHA4Q9H4M7 779 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 KCNMB3Q9NPA1 279 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNE2-209ENST00000553308 RGL1Q9NZL6 768 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 CACNA1AO00555 2505 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 DMDP11532 3685 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 MYH15Q9Y2K3 1946 aa10.13□□□□□ -0.79
SYNE2-209ENST00000553308 MTCL1Q9Y4B5 1905 aaKnown RBP10.13□□□□□ -0.79
SYNE2-209ENST00000553308 INO80B-WBP1J3KQ70 363 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 DKC1O60832 514 aaKnown RBP eCLIP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 ZMYND10O75800 440 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 P4HBP07237 508 aaKnown RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 AKAP5P24588 427 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 YWHABP31946 246 aaKnown RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 EVCP57679 992 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 PTENP60484 403 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 NTHL1P78549 312 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 TOB2Q14106 344 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 PUM1Q14671 1186 aaKnown RBP eCLIP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 XKR9Q5GH70 373 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 PRSS55Q6UWB4 352 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 PARM1Q6UWI2 310 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 KRT25Q7Z3Z0 450 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 GRASPQ7Z6J2 395 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 CDR2LQ86X02 465 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 C4orf19Q8IY42 314 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 SUMF1Q8NBK3 374 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 GSTCDQ8NEC7 633 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 TCP11Q8WWU5 503 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 FGF14Q92915 247 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 DYDC2Q96IM9 177 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 MTRQ99707 1265 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 COLEC11Q9BWP8 271 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 CSRNP2Q9H175 543 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 XPNPEP1Q9NQW7 623 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 FNIP2Q9P278 1114 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 ADAM28Q9UKQ2 775 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 PPME1Q9Y570 386 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 PATJQ8NI35 1801 aa10.12□□□□□ -0.79
SYNE2-209ENST00000553308 EP300Q09472 2414 aaPredicted RBP10.12□□□□□ -0.79
SYNE2-209ENST00000553308 MIA3Q5JRA6 1907 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 ASAP2O43150 1006 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 B4GALT5O43286 388 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 NR1I2O75469 434 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 DEXIO95424 95 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 C1RP00736 705 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 ARF4P18085 180 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-209ENST00000553308 FSHRP23945 695 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 AXLP30530 894 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 STARD6P59095 220 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 GPC5P78333 572 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 CYP4A11Q02928 519 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 MBTD1Q05BQ5 628 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 GRIK3Q13003 919 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 SNW1Q13573 536 aaKnown RBP10.11□□□□□ -0.79
SYNE2-209ENST00000553308 CTTNQ14247 550 aaKnown RBP10.11□□□□□ -0.79
SYNE2-209ENST00000553308 EPHA7Q15375 998 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 AMHR2Q16671 573 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 USP41Q3LFD5 358 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 RTP2Q5QGT7 225 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 NCAPH2Q6IBW4 605 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 EXOC8Q8IYI6 725 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 ASAP3Q8TDY4 903 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 HASPINQ8TF76 798 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 HAS1Q92839 578 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 CCDC51Q96ER9 411 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 FAM20AQ96MK3 541 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 PAAF1Q9BRP4 392 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 LARP6Q9BRS8 491 aaKnown RBP10.11□□□□□ -0.79
SYNE2-209ENST00000553308 TRIM6Q9C030 488 aaPredicted RBP10.11□□□□□ -0.79
SYNE2-209ENST00000553308 DLL3Q9NYJ7 618 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 KLK14Q9P0G3 267 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 FBXW11Q9UKB1 542 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 CDH7Q9ULB5 785 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 KCNJ14Q9UNX9 436 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 GIT1Q9Y2X7 761 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 DOCK6Q96HP0 2047 aa10.11□□□□□ -0.79
SYNE2-209ENST00000553308 KANSL1LA0AUZ9 987 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 CPLX1O14810 134 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 KINO60870 393 aaKnown RBP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 NPTXRO95502 500 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 CREMQ03060 361 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 SPIRE1Q08AE8 756 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 CAPSQ13938 189 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 MXD4Q14582 209 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 PCBP1Q15365 356 aaKnown RBP eCLIP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 MLF2Q15773 248 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 RSPO4Q2I0M5 234 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 GALNT17Q6IS24 598 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 OTUD6AQ7L8S5 288 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 NEK8Q86SG6 692 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 POTEDQ86YR6 584 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 IFNLR1Q8IU57 520 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-209ENST00000553308 GPR65Q8IYL9 337 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 HACE1Q8IYU2 909 aa10.1□□□□□ -0.79
SYNE2-209ENST00000553308 SPATA6Q9NWH7 488 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms