RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	HEATR6	Q6AI08	1181 aa	Known RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	OTUD7B	Q6GQQ9	843 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	SULT6B1	Q6IMI4	303 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	MOB2	Q70IA6	237 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	NPM2	Q86SE8	214 aa	Known RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	NLRP10	Q86W26	655 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	METTL16	Q86W50	562 aa	Known RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	IL17RE	Q8NFR9	667 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	U2AF1L4	Q8WU68	220 aa	Known RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	RCC1L	Q96I51	464 aa	Known RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	ZBED3	Q96IU2	234 aa	Predicted RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	FGD4	Q96M96	766 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	ADGRA2	Q96PE1	1338 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	DPYSL5	Q9BPU6	564 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	PLA2G12B	Q9BX93	195 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	PARPBP	Q9NWS1	579 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	PODXL2	Q9NZ53	605 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	STAP2	Q9UGK3	403 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	DDX41	Q9UJV9	622 aa	Known RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	COA3	Q9Y2R0	106 aa	Predicted RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	TIMM13	Q9Y5L4	95 aa	Predicted RBP	3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	USP16	Q9Y5T5	823 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	EYS	Q5T1H1	3165 aa		3.06	□□□□□ -1.92
PTCH1-223	ENST00000551623	ANKRD36C	Q5JPF3	1778 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	MAP3K15	Q6ZN16	1313 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	ARNTL	O00327	626 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	ECE2	O60344	883 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	TLR2	O60603	784 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	FBXO21	O94952	628 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	SGPL1	O95470	568 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	LMNA	P02545	664 aa	Known RBP	3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	EPHX1	P07099	455 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	ZNF37A	P17032	561 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	PROZ	P22891	400 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	GJA4	P35212	333 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	NF2	P35240	595 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	ZNF76	P36508	570 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	SCRN1	Q12765	414 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	FOXL1	Q12952	345 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	PAK2	Q13177	524 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	GRAP	Q13588	217 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	MTHFSD	Q2M296	383 aa	Known RBP	3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	EMC4	Q5J8M3	183 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	SUSD4	Q5VX71	490 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	STEAP3	Q658P3	488 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	VASN	Q6EMK4	673 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	ARMC9	Q7Z3E5	817 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	TMPRSS6	Q8IU80	811 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	GPR150	Q8NGU9	434 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	MAFA	Q8NHW3	353 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	GRAPL	Q8TC17	118 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	SH3TC2	Q8TF17	1288 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	WNK4	Q96J92	1243 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	FERD3L	Q96RJ6	166 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	C1QTNF1	Q9BXJ1	281 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	TMX4	Q9H1E5	349 aa	Predicted RBP	3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	MYOZ2	Q9NPC6	264 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	KCND1	Q9NSA2	647 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	APEX2	Q9UBZ4	518 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	ZFP69B	Q9UJL9	534 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	SUGT1	Q9Y2Z0	365 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	PPP2R3B	Q9Y5P8	575 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	NCOR1	O75376	2440 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	PSME4	Q14997	1843 aa		3.05	□□□□□ -1.92
PTCH1-223	ENST00000551623	MYO3B	Q8WXR4	1341 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	SCN9A	Q15858	1988 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623		A0A1W2PQH9	124 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	PROB1	E7EW31	1015 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	WNT10B	O00744	389 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	CDK4	P11802	303 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	CCL5	P13501	91 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	RPS19	P39019	145 aa	Known RBP	3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	BCL6	P41182	706 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	GTF2A2	P52657	109 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	TEF	Q10587	303 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	GNPTAB	Q3T906	1256 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	FBXW10	Q5XX13	1052 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	LRP10	Q7Z4F1	713 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	APOBEC3F	Q8IUX4	373 aa	Known RBP	3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	FAM169B	Q8N8A8	192 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	ATXN2L	Q8WWM7	1075 aa	Known RBP	3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	TMEM169	Q96HH4	297 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	P2RX7	Q99572	595 aa	Known RBP	3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	RIOX1	Q9H6W3	641 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	DBNDD1	Q9H9R9	158 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	MYOT	Q9UBF9	498 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	POLL	Q9UGP5	575 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	GIT1	Q9Y2X7	761 aa		3.04	□□□□□ -1.92
PTCH1-223	ENST00000551623	MUC6	Q6W4X9	2439 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	ZNF804B	A4D1E1	1349 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	KRTAP23-1	A1A580	65 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	MATN2	O00339	956 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	RHOBTB3	O94955	611 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	CTGF	P29279	349 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	MSX2	P35548	267 aa	Predicted RBP	3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	GLRB	P48167	497 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	SOX9	P48436	509 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	GIPR	P48546	466 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	KRTAP10-6	P60371	365 aa	Predicted RBP	3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	SF3B3	Q15393	1217 aa	Known RBP	3.03	□□□□□ -1.92

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