RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	GPR62	Q9BZJ7	368 aa		13.39	□□□□□ -0.27
PTCH1-222	ENST00000551425	RBM28	Q9NW13	759 aa	Known RBP	13.39	□□□□□ -0.27
PTCH1-222	ENST00000551425	FBXW11	Q9UKB1	542 aa		13.39	□□□□□ -0.27
PTCH1-222	ENST00000551425		V9GY48	417 aa	Predicted RBP	13.39	□□□□□ -0.27
PTCH1-222	ENST00000551425	PKD1L2	Q7Z442	2459 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	ARL5C	A6NH57	179 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	MAF	O75444	373 aa	Predicted RBP	13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	ECI2	O75521	394 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	POU2F2	P09086	479 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	RPL17	P18621	184 aa	Known RBP	13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	CHML	P26374	656 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	LIMK1	P53667	647 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	FUT10	Q6P4F1	479 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	PRR23B	Q6ZRT6	265 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	KSR1	Q8IVT5	923 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	NPAS3	Q8IXF0	933 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	SMG8	Q8ND04	991 aa	Known RBP	13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	ITFG1	Q8TB96	612 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	RIT2	Q99578	217 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	RWDD1	Q9H446	243 aa	Predicted RBP	13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	KCNH3	Q9ULD8	1083 aa		13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.38	□□□□□ -0.27
PTCH1-222	ENST00000551425	TMEM150B	A6NC51	233 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	TM4SF5	O14894	197 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	SGSM2	O43147	1006 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	XYLB	O75191	536 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	ITGA4	P13612	1032 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	KCNA4	P22459	653 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	CCR3	P51677	355 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	SIM2	Q14190	667 aa	Predicted RBP	13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	PPM1L	Q5SGD2	360 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	LIN9	Q5TKA1	542 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	IL31	Q6EBC2	164 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	SRGAP1	Q7Z6B7	1085 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	RDM1	Q8NG50	284 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	EXOC6	Q8TAG9	804 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	DNASE1L2	Q92874	299 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	GAD1	Q99259	594 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	JPH2	Q9BR39	696 aa	Predicted RBP	13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	HEBP1	Q9NRV9	189 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	ADAM28	Q9UKQ2	775 aa		13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	RBM8A	Q9Y5S9	174 aa	Known RBP	13.37	□□□□□ -0.27
PTCH1-222	ENST00000551425	SPEG	Q15772	3267 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	FASN	P49327	2511 aa	Known RBP	13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	ZFYVE26	Q68DK2	2539 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	ESYT2	A0FGR8	921 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	MAN2B1	O00754	1011 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	MSH4	O15457	936 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	CHMP2A	O43633	222 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	GAS7	O60861	476 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	C8A	P07357	584 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	GSPT1	P15170	499 aa	Known RBP	13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	CNR2	P34972	360 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	MLH1	P40692	756 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	SCNN1G	P51170	649 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	APOA5	Q6Q788	366 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	SYNE3	Q6ZMZ3	975 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	SLC5A5	Q92911	643 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	SH2D3A	Q9BRG2	576 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	ZMYND12	Q9H0C1	365 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	UNC45A	Q9H3U1	944 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	MINDY3	Q9H8M7	445 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	MIOS	Q9NXC5	875 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	GDE1	Q9NZC3	331 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	IPP	Q9Y573	584 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	COL4A3BP	Q9Y5P4	624 aa		13.36	□□□□□ -0.27
PTCH1-222	ENST00000551425	ADAMTS3	O15072	1205 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	CCL16	O15467	120 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	HR	O43593	1189 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	AAMP	Q13685	434 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	REXO1	Q8N1G1	1221 aa	Known RBP	13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	ZFP42	Q96MM3	310 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	CLSTN3	Q9BQT9	956 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	TEKT3	Q9BXF9	490 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	LRRC2	Q9BYS8	371 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	PLA2G2F	Q9BZM2	168 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	RNF39	Q9H2S5	420 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	POLI	Q9UNA4	740 aa		13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	CNOT1	A5YKK6	2376 aa	Known RBP	13.35	□□□□□ -0.27
PTCH1-222	ENST00000551425	IGHD	P01880	384 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	CXCL12	P48061	93 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	RTN1	Q16799	776 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	UVSSA	Q2YD98	709 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	PABPC1L	Q4VXU2	614 aa	Known RBP	13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	RTP2	Q5QGT7	225 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	TTC22	Q5TAA0	569 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	LRCH2	Q5VUJ6	765 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	ANO5	Q75V66	913 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	KDF1	Q8NAX2	398 aa	Predicted RBP	13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	PIK3R5	Q8WYR1	880 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	ELSPBP1	Q96BH3	223 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	CCDC51	Q96ER9	411 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	EIF2A	Q9BY44	585 aa	Known RBP	13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	C6orf50	Q9HD87	102 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	DNMT3B	Q9UBC3	853 aa	Known RBP	13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	ZMIZ1	Q9ULJ6	1067 aa		13.34	□□□□□ -0.27
PTCH1-222	ENST00000551425	NDRG2	Q9UN36	371 aa	Known RBP	13.34	□□□□□ -0.27

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