RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SFPQP23246 707 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS29-208ENST00000550267 AFF1P51825 1210 aaKnown RBP11.8□□□□□ -0.52
VPS29-208ENST00000550267 NONOQ15233 471 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS29-208ENST00000550267 TARBP2Q15633 366 aaKnown RBP11.8□□□□□ -0.52
VPS29-208ENST00000550267 RSPO4Q2I0M5 234 aaPredicted RBP11.8□□□□□ -0.52
VPS29-208ENST00000550267 MTERF2Q49AM1 385 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 CREB3L3Q68CJ9 461 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 DESI1Q6ICB0 168 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 ZC3H14Q6PJT7 736 aaKnown RBP11.8□□□□□ -0.52
VPS29-208ENST00000550267 AGMOQ6ZNB7 445 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 BAP1Q92560 729 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 IRF7Q92985 503 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 DISC1Q9NRI5 854 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 MRPL17Q9NRX2 175 aaKnown RBP11.8□□□□□ -0.52
VPS29-208ENST00000550267 EPS15L1Q9UBC2 864 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 SIT1Q9Y3P8 196 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 CACNA1AO00555 2505 aa11.8□□□□□ -0.52
VPS29-208ENST00000550267 GVINP1Q7Z2Y8 2422 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 RIF1Q5UIP0 2472 aaKnown RBP11.79□□□□□ -0.52
VPS29-208ENST00000550267 TMEM150BA6NC51 233 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 FAM181BA6NEQ2 426 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 NRP1O14786 923 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 ZBTB43O43298 467 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 CHMP2AO43633 222 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 ZNF623O75123 536 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 RFPL2O75678 378 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 URODP06132 367 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 NDUFV2P19404 249 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 CDC27P30260 824 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 RAB27AP51159 221 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 AK2P54819 239 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 PHLDB3Q6NSJ2 640 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 TAS1R1Q7RTX1 841 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 C1orf210Q8IVY1 113 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 SUMF1Q8NBK3 374 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 ST13P5Q8NFI4 369 aaPredicted RBP11.79□□□□□ -0.52
VPS29-208ENST00000550267 PRR7Q8TB68 274 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 URGCPQ8TCY9 931 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 STAMQ92783 540 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 LENG9Q96B70 501 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 PGBD4Q96DM1 585 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 TCEANC2Q96MN5 208 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 SH2D3AQ9BRG2 576 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 UNC45AQ9H3U1 944 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 ARHGEF3Q9NR81 526 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 STK39Q9UEW8 545 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 FAN1Q9Y2M0 1017 aa11.79□□□□□ -0.52
VPS29-208ENST00000550267 GOLGA8AA7E2F4 631 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 GOLGA8BA8MQT2 603 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 TEX28O15482 410 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 LRRN2O75325 713 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 SOD2P04179 222 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 ALDH2P05091 517 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 GLULP15104 373 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 VARSP26640 1264 aaKnown RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 CIITAP33076 1130 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 GMPRP36959 345 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 NECTIN1Q15223 517 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 PFKFB3Q16875 520 aaPredicted RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 CYP26C1Q6V0L0 522 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 CATSPER4Q7RTX7 472 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 RHPN2Q8IUC4 686 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 KSR1Q8IVT5 923 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 REXO1Q8N1G1 1221 aaKnown RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 SMG7Q92540 1137 aaKnown RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 GJA10Q969M2 543 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 NXPE3Q969Y0 559 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 ZNF707Q96C28 371 aaPredicted RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 NLRP4Q96MN2 994 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 FAM193BQ96PV7 902 aaPredicted RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 RPS6KC1Q96S38 1066 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 CEP89Q96ST8 783 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 TMEM175Q9BSA9 504 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 HERC2P3Q9BVR0 1158 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 FOXQ1Q9C009 403 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 MARCH5Q9NX47 278 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 SUCLA2Q9P2R7 463 aaPredicted RBP11.78□□□□□ -0.52
VPS29-208ENST00000550267 PCDHB2Q9Y5E7 798 aa11.78□□□□□ -0.52
VPS29-208ENST00000550267 DMXL1Q9Y485 3027 aa11.77□□□□□ -0.52
VPS29-208ENST00000550267 IGKV6-21A0A0C4DH24 114 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 ESYT2A0FGR8 921 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 MSH4O15457 936 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 EDIL3O43854 480 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 GAS7O60861 476 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 KINO60870 393 aaKnown RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 STBD1O95210 358 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 GLUD1P00367 558 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 POMCP01189 267 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 ADH1AP07327 375 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 SPATA31D3P0C874 917 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 DNM2P50570 870 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 CDC42EP1Q00587 391 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 LINC01559Q495D7 138 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 DCLRE1AQ6PJP8 1040 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 SPATA31D4Q6ZUB0 917 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 GET4Q7L5D6 327 aaPredicted RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 MRPL10Q7Z7H8 261 aaKnown RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 ZNF410Q86VK4 478 aa11.77□□□□□ -0.53
VPS29-208ENST00000550267 MAML2Q8IZL2 1156 aaPredicted RBP11.77□□□□□ -0.53
VPS29-208ENST00000550267 ZNF511Q8NB15 262 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms