RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 PRPHP41219 470 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 AFF1P51825 1210 aaKnown RBP12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 SIGLEC14Q08ET2 396 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 GRIK3Q13003 919 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 PTGDRQ13258 359 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 KRT79Q5XKE5 535 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 POTEGQ6S5H5 508 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 DTHD1Q6ZMT9 781 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 ZBTB33Q86T24 672 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 C4orf32Q8N8J7 132 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 IGSF22Q8N9C0 903 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 HDAC7Q8WUI4 952 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 BCL7CQ8WUZ0 217 aaPredicted RBP12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 FBXL18Q96ME1 805 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 PRRX2Q99811 253 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 HERC2P3Q9BVR0 1158 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 RNF39Q9H2S5 420 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 C17orf75Q9HAS0 396 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 GPRC5CQ9NQ84 441 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 PARP2Q9UGN5 583 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 KIAA1024Q9UPX6 916 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 DNM3Q9UQ16 869 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 HES2Q9Y543 173 aa12.02□□□□□ -0.49
VTI1BP3-201ENST00000550220 A0A087WWV3 80 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 TMEM221A6NGB7 291 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 M0R296 226 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 B4GALT5O43286 388 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 CNPP09543 421 aaKnown RBP12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 EPCAMP16422 314 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 GLUD2P49448 558 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 SCNN1GP51170 649 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 CLCN4P51793 760 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 PTPN21Q16825 1174 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 USP41Q3LFD5 358 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 DCAF4L1Q3SXM0 396 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 C15orf39Q6ZRI6 1047 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 HFE2Q6ZVN8 426 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 SUGP1Q8IWZ8 645 aaKnown RBP12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 UBALD2Q8IYN6 164 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 AUTS2Q8WXX7 1259 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 PBXIP1Q96AQ6 731 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 ZFP42Q96MM3 310 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 TIPINQ9BVW5 301 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 APOL6Q9BWW8 343 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 APOL5Q9BWW9 433 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 VN1R3Q9BXE9 311 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 RHOBTB2Q9BYZ6 727 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 BHMT2Q9H2M3 363 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 NXF3Q9H4D5 531 aaKnown RBP12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 PRG3Q9Y2Y8 225 aaPredicted RBP12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 KIAA1671Q9BY89 1806 aa12.01□□□□□ -0.49
VTI1BP3-201ENST00000550220 PLXNA4Q9HCM2 1894 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 H3BQV1 296 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 B4GALT3O60512 393 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 TADA2AO75478 443 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 SSBP05455 408 aaKnown RBP eCLIP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 PRKCBP05771 671 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 AKAP5P24588 427 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 DSG1Q02413 1049 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 ELAVL2Q12926 359 aaKnown RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 TUSC3Q13454 348 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 RARS2Q5T160 578 aaKnown RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 KIAA0319Q5VV43 1072 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 MCTP1Q6DN14 999 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 OTOP3Q7RTS5 596 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 GPR149Q86SP6 731 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 RNF168Q8IYW5 571 aaPredicted RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 ZDHHC14Q8IZN3 488 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 TDRD5Q8NAT2 981 aaKnown RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 GSTCDQ8NEC7 633 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 CMASQ8NFW8 434 aaPredicted RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 SNX29Q8TEQ0 813 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 ACSF2Q96CM8 615 aaPredicted RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 PLEKHA4Q9H4M7 779 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 RXFP1Q9HBX9 757 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 TSHZ2Q9NRE2 1034 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 CHST7Q9NS84 486 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 DDX19AQ9NUU7 478 aaKnown RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 MARCH5Q9NX47 278 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 MIOSQ9NXC5 875 aa12□□□□□ -0.49
VTI1BP3-201ENST00000550220 RBM19Q9Y4C8 960 aaKnown RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 ZSCAN21Q9Y5A6 473 aaPredicted RBP12□□□□□ -0.49
VTI1BP3-201ENST00000550220 K7ERI5 159 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 EFEMP2O95967 443 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 GLUD1P00367 558 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 THP07101 528 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 TOB1P50616 345 aaPredicted RBP11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 NUBP1P53384 320 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 DMP1Q13316 513 aaPredicted RBP11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 MTMR3Q13615 1198 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 HSP90AA2PQ14568 343 aaPredicted RBP11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 ARL6IP4Q66PJ3 421 aaKnown RBP11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 FUT10Q6P4F1 479 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 PDXDC1Q6P996 788 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 CCDC149Q6ZUS6 474 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 STAMQ92783 540 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 DRC1Q96MC2 740 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 CCDC113Q9H0I3 377 aa11.99□□□□□ -0.49
VTI1BP3-201ENST00000550220 NT5C3AQ9H0P0 336 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms