RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 NR5A1Q13285 461 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 CAPSQ13938 189 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 CALCRLQ16602 461 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 AMHR2Q16671 573 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 STAMQ92783 540 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 GAD1Q99259 594 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 TRIM6Q9C030 488 aaPredicted RBP14.29□□□□□ -0.12
PTCH1-218ENST00000548945 RNF39Q9H2S5 420 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 PLEKHA4Q9H4M7 779 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 KCNK12Q9HB15 430 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 WDR6Q9NNW5 1121 aaKnown RBP14.29□□□□□ -0.12
PTCH1-218ENST00000548945 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.29□□□□□ -0.12
PTCH1-218ENST00000548945 CHST7Q9NS84 486 aa14.29□□□□□ -0.12
PTCH1-218ENST00000548945 C2CD2LO14523 706 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 XRCC6P12956 609 aaKnown RBP eCLIP14.28□□□□□ -0.12
PTCH1-218ENST00000548945 ARF4P18085 180 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-218ENST00000548945 SCNN1GP51170 649 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 SLC27A1Q6PCB7 646 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 TAS1R1Q7RTX1 841 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 FEZF2Q8TBJ5 459 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 NXPE3Q969Y0 559 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 CPB2Q96IY4 423 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 ZFP42Q96MM3 310 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 COLEC11Q9BWP8 271 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 TTC12Q9H892 705 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-218ENST00000548945 FNIP2Q9P278 1114 aa14.28□□□□□ -0.12
PTCH1-218ENST00000548945 DAXXQ9UER7 740 aaPredicted RBP14.28□□□□□ -0.12
PTCH1-218ENST00000548945 DOCK6Q96HP0 2047 aa14.27□□□□□ -0.12
PTCH1-218ENST00000548945 CLUHO75153 1309 aa14.27□□□□□ -0.12
PTCH1-218ENST00000548945 CCDC195A0A1B0GUA6 201 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 A0A1B0GUA9 196 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 FAM205CA6NFA0 338 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 FDPSP14324 419 aaKnown RBP14.27□□□□□ -0.13
PTCH1-218ENST00000548945 AOC1P19801 751 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 RARRES1P49788 294 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 CREMQ03060 361 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 GRIK3Q13003 919 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 USP41Q3LFD5 358 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 CWF19L1Q69YN2 538 aaKnown RBP14.27□□□□□ -0.13
PTCH1-218ENST00000548945 GSTCDQ8NEC7 633 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 ASAP3Q8TDY4 903 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 PRIMPOLQ96LW4 560 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 CCDC43Q96MW1 224 aaKnown RBP14.27□□□□□ -0.13
PTCH1-218ENST00000548945 RTP3Q9BQQ7 232 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 NXF3Q9H4D5 531 aaKnown RBP14.27□□□□□ -0.13
PTCH1-218ENST00000548945 MIOSQ9NXC5 875 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 ZDHHC7Q9NXF8 308 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 EPS15L1Q9UBC2 864 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 HES2Q9Y543 173 aa14.27□□□□□ -0.13
PTCH1-218ENST00000548945 NEMFO60524 1076 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 N4BP1O75113 896 aaKnown RBP14.26□□□□□ -0.13
PTCH1-218ENST00000548945 GLRA2P23416 452 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 FUT10Q6P4F1 479 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 PPP4R3CPQ6ZMV5 832 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 FLCNQ8NFG4 579 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 GTF3C6Q969F1 213 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 MTMR9Q96QG7 549 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.26□□□□□ -0.13
PTCH1-218ENST00000548945 WNT16Q9UBV4 365 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 ADAM28Q9UKQ2 775 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 FBXL21Q9UKT6 434 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 CACNA1AO00555 2505 aa14.26□□□□□ -0.13
PTCH1-218ENST00000548945 PRR23AA6NEV1 266 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 NPR3P17342 541 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 FAM187BQ17R55 369 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 CDCA2Q69YH5 1023 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-218ENST00000548945 LILRA6Q6PI73 481 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 CCDC105Q8IYK2 499 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 MCPH1Q8NEM0 835 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 SMG7Q92540 1137 aaKnown RBP14.25□□□□□ -0.13
PTCH1-218ENST00000548945 ZNF707Q96C28 371 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-218ENST00000548945 APOL6Q9BWW8 343 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 POLR3FQ9H1D9 316 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-218ENST00000548945 PRMT7Q9NVM4 692 aaPredicted RBP14.25□□□□□ -0.13
PTCH1-218ENST00000548945 TRIP11Q15643 1979 aa14.25□□□□□ -0.13
PTCH1-218ENST00000548945 DMXL1Q9Y485 3027 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 SF3B1O75533 1304 aaKnown RBP eCLIP14.24□□□□□ -0.134e-7■■■■■ 133.7
PTCH1-218ENST00000548945 BTBD18B2RXH4 712 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 F8W810 466 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 B4GALT5O43286 388 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 TGM5O43548 720 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 RFPL2O75678 378 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 NPTXRO95502 500 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 AKAP5P24588 427 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 GBP2P32456 591 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-218ENST00000548945 TXKP42681 527 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 TRIM29Q14134 588 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 ASCL5Q7RTU5 278 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 DIS3L2Q8IYB7 885 aaKnown RBP14.24□□□□□ -0.13
PTCH1-218ENST00000548945 SIX5Q8N196 739 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 NSUN7Q8NE18 718 aaKnown RBP14.24□□□□□ -0.13
PTCH1-218ENST00000548945 PIGOQ8TEQ8 1089 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 GPR62Q9BZJ7 368 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 PRKD2Q9BZL6 878 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 NT5C3AQ9H0P0 336 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 TUFT1Q9NNX1 390 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 DCHS1Q96JQ0 3298 aa14.24□□□□□ -0.13
PTCH1-218ENST00000548945 VWA8A3KMH1 1905 aa14.23□□□□□ -0.13
PTCH1-218ENST00000548945 LRRIQ4A6NIV6 560 aa14.23□□□□□ -0.13
PTCH1-218ENST00000548945 PI15O43692 258 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms