RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 PAN2Q504Q3 1202 aaKnown RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 FBXO47Q5MNV8 452 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 PLPP4Q5VZY2 271 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 TTBK2Q6IQ55 1244 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 KIAA1841Q6NSI8 718 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 DTHD1Q6ZMT9 781 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 NT5DC4Q86YG4 428 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 FTSJ3Q8IY81 847 aaKnown RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 DCLK2Q8N568 766 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 TMEM57Q8N5G2 664 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 SUMF1Q8NBK3 374 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 NETO1Q8TDF5 533 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 SYTL5Q8TDW5 730 aaPredicted RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 RIN2Q8WYP3 895 aaPredicted RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 MRPS27Q92552 414 aaKnown RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 TTC9Q92623 222 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 APPBP2Q92624 585 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 CHMP4CQ96CF2 233 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 TAAR1Q96RJ0 339 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 TCF25Q9BQ70 676 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 LPIN3Q9BQK8 851 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 NAPBQ9H115 298 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 SMOC2Q9H3U7 446 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 EPB41L4AQ9HCS5 686 aaPredicted RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 SETD4Q9NVD3 440 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 TMEM260Q9NX78 707 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 MAP3K20Q9NYL2 800 aaKnown RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 GMEB2Q9UKD1 530 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 USP18Q9UMW8 372 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 MRPL11Q9Y3B7 192 aaKnown RBP4.73□□□□□ -1.65
SNHG1-220ENST00000544550 PCDHB7Q9Y5E2 793 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 PCDHGA2Q9Y5H1 932 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 HCFC2Q9Y5Z7 792 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 MYH8P13535 1937 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 MCM3APO60318 1980 aa4.73□□□□□ -1.65
SNHG1-220ENST00000544550 FRMPD2Q68DX3 1309 aaPredicted RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 MICAL3Q7RTP6 2002 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 TET1Q8NFU7 2136 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 DMDP11532 3685 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 GPAA1O43292 621 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 TBC1D4O60343 1298 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 FOXD2O60548 495 aaPredicted RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 RAB11FIP3O75154 756 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 HMMRO75330 724 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 PDHBP11177 359 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 TOP1P11387 765 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 EPXP11678 715 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 UBA1P22314 1058 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ALAS2P22557 587 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ERCC5P28715 1186 aaPredicted RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 PPM1AP35813 382 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 SARSP49591 514 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ERVFC1P60507 584 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ADAM17P78536 824 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 PPARAQ07869 468 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 PAK2Q13177 524 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 GIT2Q14161 759 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 NEDD9Q14511 834 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 SMC1AQ14683 1233 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 USH1GQ495M9 461 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 RPS26P11Q5JNZ5 115 aaPredicted RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 PPM1JQ5JR12 505 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ODR4Q5SWX8 454 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 GPATCH4Q5T3I0 446 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ZKSCAN2Q63HK3 967 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 CEP135Q66GS9 1140 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 CEP85Q6P2H3 762 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ELMSAN1Q6PJG2 1045 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 METTL7BQ6UX53 244 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ADAMTSL4Q6UY14 1074 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 C1orf229Q6ZS94 237 aaPredicted RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 CCDC149Q6ZUS6 474 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ITPRIPQ8IWB1 547 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 IFNL3Q8IZI9 196 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 SAMD3Q8N6K7 520 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 COLGALT1Q8NBJ5 622 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 LMBR1Q8WVP7 490 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ATRIPQ8WXE1 791 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 TNPO1Q92973 898 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ACDQ96AP0 544 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 ADAM19Q9H013 955 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 SMG9Q9H0W8 520 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 MUC3BQ9H195 1237 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 KCNK12Q9HB15 430 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 PXMP2Q9NR77 195 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 IL17RBQ9NRM6 502 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 C1orf112Q9NSG2 853 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 FBXO4Q9UKT5 387 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 STARD13Q9Y3M8 1113 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 SIT1Q9Y3P8 196 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 MYO5AQ9Y4I1 1855 aaKnown RBP4.72□□□□□ -1.65
SNHG1-220ENST00000544550 CNTNAP5Q8WYK1 1306 aa4.72□□□□□ -1.65
SNHG1-220ENST00000544550 DNAH14Q0VDD8 3507 aa4.71□□□□□ -1.65
SNHG1-220ENST00000544550 KMT2BQ9UMN6 2715 aaPredicted RBP4.71□□□□□ -1.66
SNHG1-220ENST00000544550 TBKBP1A7MCY6 615 aa4.71□□□□□ -1.66
SNHG1-220ENST00000544550 HIDE1A8MVS5 230 aa4.71□□□□□ -1.66
SNHG1-220ENST00000544550 SLC30A4O14863 429 aa4.71□□□□□ -1.66
SNHG1-220ENST00000544550 RNF113AO15541 343 aaKnown RBP4.71□□□□□ -1.66
SNHG1-220ENST00000544550 LAMTOR5O43504 91 aa4.71□□□□□ -1.66
SNHG1-220ENST00000544550 RANBP6O60518 1105 aaKnown RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms