RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SLKQ9H2G2 1235 aaPredicted RBP19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 PLEKHA4Q9H4M7 779 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 XPNPEP1Q9NQW7 623 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 RGL1Q9NZL6 768 aa19.87■□□□□ 0.77
CLSTN3-214ENST00000542663 GAS2O43903 313 aaKnown RBP19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 C1RP00736 705 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 AXLP30530 894 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 PTENP60484 403 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 GALNT17Q6IS24 598 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 NOTUMQ6P988 496 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 GET4Q7L5D6 327 aaPredicted RBP19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 KRT25Q7Z3Z0 450 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 GLYCTKQ8IVS8 523 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 KIAA2013Q8IYS2 634 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 PRKD2Q9BZL6 878 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 CSRNP2Q9H175 543 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 NXF3Q9H4D5 531 aaKnown RBP19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 ARHGEF3Q9NR81 526 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 SLC2A4RGQ9NR83 387 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 ZDHHC7Q9NXF8 308 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 KCNJ14Q9UNX9 436 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 SIT1Q9Y3P8 196 aa19.86■□□□□ 0.77
CLSTN3-214ENST00000542663 MED19A0JLT2 244 aaPredicted RBP19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 SP9P0CG40 484 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 GLULP15104 373 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 RPL17P18621 184 aaKnown RBP19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 RFX1P22670 979 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 SPIRE1Q08AE8 756 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 EPHA7Q15375 998 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 AMHR2Q16671 573 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 XKR9Q5GH70 373 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 PPP4R3AQ6IN85 833 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 FUT10Q6P4F1 479 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 IFNLR1Q8IU57 520 aaPredicted RBP19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 DYDC2Q96IM9 177 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 APOL6Q9BWW8 343 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 PIDD1Q9HB75 910 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 FNIP2Q9P278 1114 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 NUMBLQ9Y6R0 609 aa19.85■□□□□ 0.77
CLSTN3-214ENST00000542663 POTEMA6NI47 508 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 PSMA5P28066 241 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 MBTD1Q05BQ5 628 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 CTTNQ14247 550 aaKnown RBP19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 PCBP1Q15365 356 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 USP41Q3LFD5 358 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 RUFY3Q7L099 469 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 C1orf210Q8IVY1 113 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 GPR65Q8IYL9 337 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 FAM177A1Q8N128 213 aaPredicted RBP19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 RABGGTAQ92696 567 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 CCDC51Q96ER9 411 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 MTRQ99707 1265 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 LARP6Q9BRS8 491 aaKnown RBP19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 RPP25Q9BUL9 199 aaKnown RBP19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 PHF20Q9BVI0 1012 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 COLEC11Q9BWP8 271 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 FOXQ1Q9C009 403 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 ADAM28Q9UKQ2 775 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 GIT1Q9Y2X7 761 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 CEP250Q9BV73 2442 aa19.84■□□□□ 0.77
CLSTN3-214ENST00000542663 LRRN2O75325 713 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 ARF4P18085 180 aaPredicted RBP19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 AKAP5P24588 427 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 CYP4A11Q02928 519 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 CAPSQ13938 189 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 DCLRE1AQ6PJP8 1040 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 CENPQQ7L2Z9 268 aaPredicted RBP19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 OTUD6AQ7L8S5 288 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 NEK8Q86SG6 692 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 POTEDQ86YR6 584 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 MAML2Q8IZL2 1156 aaPredicted RBP19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 PJA1Q8NG27 643 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 FGF14Q92915 247 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 ZNF274Q96GC6 653 aaPredicted RBP19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 ZSWIM6Q9HCJ5 1215 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 CACNG4Q9UBN1 327 aa19.83■□□□□ 0.77
CLSTN3-214ENST00000542663 INO80B-WBP1J3KQ70 363 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 CPLX1O14810 134 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 TBX3O15119 743 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 NR1I2O75469 434 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 ZMYND10O75800 440 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 GCFC2P16383 781 aaKnown RBP19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 STARD6P59095 220 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 POU5F1BQ06416 359 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 MXD4Q14582 209 aaPredicted RBP19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 RTP2Q5QGT7 225 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 NCAPH2Q6IBW4 605 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 PRSS55Q6UWB4 352 aaPredicted RBP19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 CDR2LQ86X02 465 aaPredicted RBP19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 DCLK2Q8N568 766 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 ASAP3Q8TDY4 903 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 PAAF1Q9BRP4 392 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 ZSWIM4Q9H7M6 989 aa19.82■□□□□ 0.76
CLSTN3-214ENST00000542663 CCDC194A0A1B0GVG4 234 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 B4GALT5O43286 388 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 CCNT1O60563 726 aaKnown RBP19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 SLITRK3O94933 977 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 GRIK3Q13003 919 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms