RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PTPRJQ12913 1337 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 ZNF233A6NK53 670 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 MAPK13O15264 365 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 CYP26A1O43174 497 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 MAFO75444 373 aaPredicted RBP15.71■□□□□ 0.11
CLIP1-216ENST00000541410 CLSTN1O94985 981 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 SGPL1O95470 568 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 H2AFZP0C0S5 128 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 CETPP11597 493 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 TNNI1P19237 187 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 PLCB4Q15147 1175 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 H2AFVQ71UI9 128 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 CDR2LQ86X02 465 aaPredicted RBP15.71■□□□□ 0.11
CLIP1-216ENST00000541410 TXLNBQ8N3L3 684 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 METTL13Q8N6R0 699 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 SLC30A5Q8TAD4 765 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 RNPEPQ9H4A4 650 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 TMEM8AQ9HCN3 771 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 HYOU1Q9Y4L1 999 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 GRIN3BO60391 1043 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 GARTP22102 1010 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 VSNL1P62760 191 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 KCTD19Q17RG1 926 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-216ENST00000541410 CRELD2Q6UXH1 353 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-216ENST00000541410 SLC47A2Q86VL8 602 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 RHPN2Q8IUC4 686 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 RNF149Q8NC42 400 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 FBXL13Q8NEE6 735 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 PTPN18Q99952 460 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 MSTO1Q9BUK6 570 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 PLEKHA4Q9H4M7 779 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 RAB20Q9NX57 234 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 NENFQ9UMX5 172 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 DNAH12Q6ZR08 3092 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 CSDE1O75534 798 aaKnown RBP15.7■□□□□ 0.1
CLIP1-216ENST00000541410 COPB2P35606 906 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 RFC5P40937 340 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 ADCYAP1R1P41586 468 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 CLCN3P51790 818 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 TTLL4Q14679 1199 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 SPOPLQ6IQ16 392 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 CC2D1AQ6P1N0 951 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-216ENST00000541410 PPP1R13LQ8WUF5 828 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 BBXQ8WY36 941 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-216ENST00000541410 NLRP4Q96MN2 994 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 SYT11Q9BT88 431 aa15.7■□□□□ 0.1
CLIP1-216ENST00000541410 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-216ENST00000541410 P4HA2O15460 535 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 EXTL3O43909 919 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 TNFSF9P41273 254 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 GTF2A2P52657 109 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 LAMTOR4Q0VGL1 99 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 KIF22Q14807 665 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 RPUSD2Q8IZ73 545 aaKnown RBP15.69■□□□□ 0.1
CLIP1-216ENST00000541410 PSPC1Q8WXF1 523 aaKnown RBP15.69■□□□□ 0.1
CLIP1-216ENST00000541410 FNBP1Q96RU3 617 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 AGPAT1Q99943 283 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 TCHPQ9BT92 498 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 THAP2Q9H0W7 228 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 PCDHGC5Q9Y5F6 944 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 ADCY3O60266 1144 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 ZNF286BP0CG31 522 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 BIRC3Q13489 604 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 PRPF4BQ13523 1007 aaKnown RBP15.69■□□□□ 0.1
CLIP1-216ENST00000541410 CCDC181Q5TID7 509 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 HELQQ8TDG4 1101 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 TMC2Q8TDI7 906 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 ATP8B4Q8TF62 1192 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 ARHGEF26Q96DR7 871 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 FAM212AQ96EL1 285 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 IVNS1ABPQ9Y6Y0 642 aa15.69■□□□□ 0.1
CLIP1-216ENST00000541410 H0YCG3 227 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 CCNA1P78396 465 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 CKAP4Q07065 602 aaKnown RBP15.68■□□□□ 0.1
CLIP1-216ENST00000541410 ZNF792Q3KQV3 632 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 C10orf76Q5T2E6 689 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 KCNV1Q6PIU1 500 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 NOP9Q86U38 636 aaKnown RBP15.68■□□□□ 0.1
CLIP1-216ENST00000541410 SCFD2Q8WU76 684 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 NT5C1BQ96P26 610 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 RBAKQ9NYW8 714 aaPredicted RBP15.68■□□□□ 0.1
CLIP1-216ENST00000541410 ZC3H4Q9UPT8 1303 aaKnown RBP15.68■□□□□ 0.1
CLIP1-216ENST00000541410 SIP14410 1827 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 ASB14A6NK59 587 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 LGR5O75473 907 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 SASH3O75995 380 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 MMEP08473 750 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 OSTNP61366 133 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 MEI1Q5TIA1 1274 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 TDRD10Q5VZ19 366 aaKnown RBP15.68■□□□□ 0.1
CLIP1-216ENST00000541410 TAPT1Q6NXT6 567 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 DPP9Q86TI2 863 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 MSANTD4Q8NCY6 345 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 SHCBP1Q8NEM2 672 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 TPCN2Q8NHX9 752 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 SLC35G2Q8TBE7 412 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 PCDHB18PQ96TA0 734 aa15.68■□□□□ 0.1
CLIP1-216ENST00000541410 ATMINO43313 823 aaPredicted RBP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 ZRANB2O95218 330 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLIP1-216ENST00000541410 CCDC172P0C7W6 258 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms