RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 AGPAT3Q9NRZ7 376 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 TYW1Q9NV66 732 aaKnown RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 PRMT7Q9NVM4 692 aaPredicted RBP10.23□□□□□ -0.77
DDX55-208ENST00000541259 ST3GAL5Q9UNP4 418 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 EXOC7Q9UPT5 735 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 TRAF3IP3Q9Y228 551 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 MICAL3Q7RTP6 2002 aa10.23□□□□□ -0.77
DDX55-208ENST00000541259 ABLIM1O14639 778 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 HNRNPDLO14979 420 aaKnown RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 NBNO60934 754 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 ERLIN2O94905 339 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 SCP2P22307 547 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 LIG4P49917 911 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 CYP2J2P51589 502 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 NFX1Q12986 1120 aaKnown RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 HSP90AA4PQ58FG1 418 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 CT47A1Q5JQC4 288 aaPredicted RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 ATF7IP2Q5U623 682 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 TSHZ1Q6ZSZ6 1077 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 ZBTB33Q86T24 672 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 LUZP1Q86V48 1076 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 ENOX1Q8TC92 643 aaKnown RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 BPIFA3Q9BQP9 254 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 CBWD1Q9BRT8 395 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 SRRTQ9BXP5 876 aaKnown RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 MRPL4Q9BYD3 311 aaKnown RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 NAT10Q9H0A0 1025 aaKnown RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 HSD3B7Q9H2F3 369 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 TMX1Q9H3N1 280 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 PTPRHQ9HD43 1115 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 ERVK-5Q9HDB9 667 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 PRDM5Q9NQX1 630 aaPredicted RBP10.22□□□□□ -0.77
DDX55-208ENST00000541259 DMAC2Q9NW81 257 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 PADI3Q9ULW8 664 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 CNTNAP2Q9UHC6 1331 aa10.22□□□□□ -0.77
DDX55-208ENST00000541259 LTBP2Q14767 1821 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 PDCD11Q14690 1871 aaKnown RBP10.21□□□□□ -0.77
DDX55-208ENST00000541259 A0A1B0GUA9 196 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 BICDL2A1A5D9 508 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 GOLGA8IPA6NC78 632 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 GOLGA8JA6NMD2 632 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 KIAA0355O15063 1070 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 CALUO43852 315 aaPredicted RBP10.21□□□□□ -0.77
DDX55-208ENST00000541259 MGEA5O60502 916 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 NR3C1P04150 777 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 PROZP22891 400 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 SFPQP23246 707 aaKnown RBP eCLIP10.21□□□□□ -0.77
DDX55-208ENST00000541259 ABCD1P33897 745 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 CASP4P49662 377 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 MYL5Q02045 173 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 LRRC63Q05C16 580 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 PAK2Q13177 524 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 ADAM9Q13443 819 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 TMEM132AQ24JP5 1023 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 TCTN1Q2MV58 587 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 SEZ6Q53EL9 994 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 SPATA1Q5VX52 437 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 ARMCX5Q6P1M9 558 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 ZPBP2Q6X784 338 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 LRRC55Q6ZSA7 311 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 HS2ST1Q7LGA3 356 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 FAM200AQ8TCP9 573 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 POMGNT1Q8WZA1 660 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 VWCEQ96DN2 955 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 SAAL1Q96ER3 474 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 PRIMPOLQ96LW4 560 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 TSG101Q99816 390 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 PDZD7Q9H5P4 517 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 NPDC1Q9NQX5 325 aaPredicted RBP10.21□□□□□ -0.77
DDX55-208ENST00000541259 SAMSN1Q9NSI8 373 aaKnown RBP10.21□□□□□ -0.77
DDX55-208ENST00000541259 AGPAT5Q9NUQ2 364 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 FANCLQ9NW38 375 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 HSPBP1Q9NZL4 362 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 ANKFY1Q9P2R3 1169 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 PIN4Q9Y237 131 aaKnown RBP10.21□□□□□ -0.77
DDX55-208ENST00000541259 TNFSF13BQ9Y275 285 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 NFE2L3Q9Y4A8 694 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 STYXL1Q9Y6J8 313 aa10.21□□□□□ -0.77
DDX55-208ENST00000541259 IKBKBO14920 756 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 GPR182O15218 404 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 CLDN3O15551 220 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 TOM1L1O75674 476 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 NPTXRO95502 500 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 CAVIN2O95810 425 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 TIMP1P01033 207 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 HARSP12081 509 aaKnown RBP10.2□□□□□ -0.78
DDX55-208ENST00000541259 GARTP22102 1010 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 NR2F2P24468 414 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 MATR3P43243 847 aaKnown RBP eCLIP10.2□□□□□ -0.78
DDX55-208ENST00000541259 NFIL3Q16649 462 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 TPD52L1Q16890 204 aaPredicted RBP10.2□□□□□ -0.78
DDX55-208ENST00000541259 EDRF1Q3B7T1 1238 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 ZBTB41Q5SVQ8 909 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 UBXN11Q5T124 520 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 MPZL3Q6UWV2 235 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 DEFB128Q7Z7B8 93 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 RTN4RL1Q86UN2 441 aaPredicted RBP10.2□□□□□ -0.78
DDX55-208ENST00000541259 IRF2BP1Q8IU81 584 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 C12orf56Q8IXR9 622 aa10.2□□□□□ -0.78
DDX55-208ENST00000541259 ZC3H3Q8IXZ2 948 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms