RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 ZFP42Q96MM3 310 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 RTP3Q9BQQ7 232 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 PLEKHA4Q9H4M7 779 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 TTC12Q9H892 705 aaPredicted RBP13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 MIOSQ9NXC5 875 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 FNIP2Q9P278 1114 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 EPS15L1Q9UBC2 864 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 HES2Q9Y543 173 aa13.34□□□□□ -0.27
CBX3P4-202ENST00000540428 MYO10Q9HD67 2058 aa13.33□□□□□ -0.27
CBX3P4-202ENST00000540428 A0A1B0GUA9 196 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 FAM205CA6NFA0 338 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 NEMFO60524 1076 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 NPR3P17342 541 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 GLRA2P23416 452 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 CREMQ03060 361 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 GRIK3Q13003 919 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 USP41Q3LFD5 358 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 FUT10Q6P4F1 479 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 SLC27A1Q6PCB7 646 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 GSTCDQ8NEC7 633 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 FLCNQ8NFG4 579 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 PRIMPOLQ96LW4 560 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 CCDC43Q96MW1 224 aaKnown RBP13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 NXF3Q9H4D5 531 aaKnown RBP13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 ZDHHC7Q9NXF8 308 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 WNT16Q9UBV4 365 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 CLUHO75153 1309 aa13.33□□□□□ -0.28
CBX3P4-202ENST00000540428 PRR23AA6NEV1 266 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 N4BP1O75113 896 aaKnown RBP13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 PPP4R3CPQ6ZMV5 832 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 CCDC105Q8IYK2 499 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 SMG7Q92540 1137 aaKnown RBP13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 MTMR9Q96QG7 549 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 APOL6Q9BWW8 343 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 ADAM28Q9UKQ2 775 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 FBXL21Q9UKT6 434 aa13.32□□□□□ -0.28
CBX3P4-202ENST00000540428 USP34Q70CQ2 3546 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 TGM5O43548 720 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 RFPL2O75678 378 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 NPTXRO95502 500 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 AKAP5P24588 427 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 GBP2P32456 591 aaPredicted RBP13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 TXKP42681 527 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 FAM187BQ17R55 369 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 LILRA6Q6PI73 481 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 ASCL5Q7RTU5 278 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 SIX5Q8N196 739 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 MCPH1Q8NEM0 835 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 GTF3C6Q969F1 213 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 ZNF707Q96C28 371 aaPredicted RBP13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 GPR62Q9BZJ7 368 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 NT5C3AQ9H0P0 336 aa13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 POLR3FQ9H1D9 316 aaPredicted RBP13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 PRMT7Q9NVM4 692 aaPredicted RBP13.31□□□□□ -0.28
CBX3P4-202ENST00000540428 BTBD18B2RXH4 712 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 F8W810 466 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 B4GALT5O43286 388 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 USO1O60763 962 aaKnown RBP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 TUSC3Q13454 348 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 TRIM29Q14134 588 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 ME3Q16798 604 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 CDCA2Q69YH5 1023 aaPredicted RBP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 ZBTB8OSQ8IWT0 167 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 DIS3L2Q8IYB7 885 aaKnown RBP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 NSUN7Q8NE18 718 aaKnown RBP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 PIGOQ8TEQ8 1089 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 NKD2Q969F2 451 aaPredicted RBP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 SNX27Q96L92 541 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 MYADMQ96S97 322 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 PRKD2Q9BZL6 878 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 FZD8Q9H461 694 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 PIDD1Q9HB75 910 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 TUFT1Q9NNX1 390 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 PARP2Q9UGN5 583 aa13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 SF3B1O75533 1304 aaKnown RBP eCLIP13.3□□□□□ -0.28
CBX3P4-202ENST00000540428 PLXNA3P51805 1871 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 LRRIQ4A6NIV6 560 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 PI15O43692 258 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 NARSO43776 548 aaKnown RBP13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 DTNBO60941 627 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 TADA2AO75478 443 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 ZMYND10O75800 440 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 SPATA31C1P0DKV0 1188 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 SRFP11831 508 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 HSP90AA2PQ14568 343 aaPredicted RBP13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 CDR2LQ86X02 465 aaPredicted RBP13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 PALB2Q86YC2 1186 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 SLC44A3Q8N4M1 653 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 NECAB1Q8N987 351 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 DTWD2Q8NBA8 298 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 RIN2Q8WYP3 895 aaPredicted RBP13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 C2orf40Q9H1Z8 148 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 ZFP37Q9Y6Q3 630 aaPredicted RBP13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 ZFHX2Q9C0A1 2572 aaPredicted RBP13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 ARID2Q68CP9 1835 aa13.29□□□□□ -0.28
CBX3P4-202ENST00000540428 POTEMA6NI47 508 aa13.28□□□□□ -0.28
CBX3P4-202ENST00000540428 ANHXE9PGG2 379 aa13.28□□□□□ -0.28
CBX3P4-202ENST00000540428 WNT7AO00755 349 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms