RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 CENPVL1A0A0U1RR11 272 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 PRR5-ARHGAP8B1AHC4 643 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 NEMP1O14524 444 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 ENPP3O14638 875 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 NCR1O76036 304 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 HSP90B1P14625 803 aaKnown RBP5.07□□□□□ -1.6
VPS13A-213ENST00000539950 LAG3P18627 525 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 CTSSP25774 331 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 KRTAP1-1Q07627 177 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 DHCR24Q15392 516 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 C19orf54Q5BKX5 351 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 GDF7Q7Z4P5 450 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 RNF180Q86T96 592 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 EAF2Q96CJ1 260 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-213ENST00000539950 CEP95Q96GE4 821 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 CDC5LQ99459 802 aaKnown RBP5.07□□□□□ -1.6
VPS13A-213ENST00000539950 TEX101Q9BY14 249 aa5.07□□□□□ -1.6
VPS13A-213ENST00000539950 BMP5P22003 454 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 TGM1P22735 817 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 GYS2P54840 703 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 RNASE9P60153 205 aaKnown RBP5.06□□□□□ -1.6
VPS13A-213ENST00000539950 MEF2AQ02078 507 aaPredicted RBP5.06□□□□□ -1.6
VPS13A-213ENST00000539950 NHLH2Q02577 135 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 IQSEC1Q6DN90 963 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 CLRN3Q8NCR9 226 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 OR10H5Q8NGA6 315 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 USP7Q93009 1102 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 MYEOVQ96EZ4 313 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 ANKFY1Q9P2R3 1169 aa5.06□□□□□ -1.6
VPS13A-213ENST00000539950 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-213ENST00000539950 TBKBP1A7MCY6 615 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 B5MCH6 92 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 ZNF185O15231 689 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 ADCY6O43306 1168 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 PPFIA4O75335 1185 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 ZSCAN20P17040 1043 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-213ENST00000539950 ADRA1BP35368 520 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 FSCN1Q16658 493 aaKnown RBP5.05□□□□□ -1.6
VPS13A-213ENST00000539950 UGT8Q16880 541 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 PRAMEF14Q5SWL7 426 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 DRICH1Q6PGQ1 229 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-213ENST00000539950 HDGFL2Q7Z4V5 671 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-213ENST00000539950 THNSL2Q86YJ6 484 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 UBR7Q8N806 425 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 RNF169Q8NCN4 708 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 BEND2Q8NDZ0 799 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 CRAMP1Q96RY5 1269 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 DCLRE1CQ96SD1 692 aaKnown RBP5.05□□□□□ -1.6
VPS13A-213ENST00000539950 IFT22Q9H7X7 185 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 AKIP1Q9NQ31 210 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 GPRC5DQ9NZD1 345 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 DKK2Q9UBU2 259 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 PACSIN3Q9UKS6 424 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 CLCA2Q9UQC9 943 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 TBX22Q9Y458 520 aa5.05□□□□□ -1.6
VPS13A-213ENST00000539950 TMEM200CA6NKL6 621 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 RNASET2O00584 256 aaKnown RBP5.04□□□□□ -1.6
VPS13A-213ENST00000539950 B3GALT2O43825 422 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 NDUFA10O95299 355 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 BEAN1Q3B7T3 259 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 PDCD4Q53EL6 469 aaKnown RBP5.04□□□□□ -1.6
VPS13A-213ENST00000539950 MFSD14BQ5SR56 506 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 STRA8Q7Z7C7 330 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 CMIPQ8IY22 773 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 SLC35B2Q8TB61 432 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 NEU1Q99519 415 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 SERHL2Q9H4I8 314 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 DPP7Q9UHL4 492 aa5.04□□□□□ -1.6
VPS13A-213ENST00000539950 WNT10BO00744 389 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 GASTP01350 101 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 LMNAP02545 664 aaKnown RBP5.03□□□□□ -1.6
VPS13A-213ENST00000539950 ENPP1P22413 925 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 ZEB1P37275 1124 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-213ENST00000539950 SESN3P58005 492 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 CDK17Q00537 523 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 STRN3Q13033 797 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS13A-213ENST00000539950 BMT2Q1RMZ1 405 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 FAM102AQ5T9C2 384 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-213ENST00000539950 HECTD2Q5U5R9 776 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 METRNLQ641Q3 311 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 EFCAB12Q6NXP0 572 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 DDX46Q7L014 1031 aaKnown RBP5.03□□□□□ -1.6
VPS13A-213ENST00000539950 REPS2Q8NFH8 660 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 ZNF480Q8WV37 535 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 TFAP2CQ92754 450 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 TTC1Q99614 292 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 WDR11Q9BZH6 1224 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 POGKQ9P215 609 aa5.03□□□□□ -1.6
VPS13A-213ENST00000539950 RPTORQ8N122 1335 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 GAGE12BA1L429 117 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 GAGE12HA6NDE8 117 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 UNC119BA6NIH7 251 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 ZEB2O60315 1214 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 PPFIA2O75334 1257 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 ULK1O75385 1050 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 RHOBTB3O94955 611 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 CRHR1P34998 444 aa5.02□□□□□ -1.61
VPS13A-213ENST00000539950 CCT2P78371 535 aaKnown RBP5.02□□□□□ -1.61
VPS13A-213ENST00000539950 MST1LQ2TV78 715 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms