RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 TISP43B9A030 160 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 N4BP3O15049 544 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 CLDN3O15551 220 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 TFRCP02786 760 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 PROZP22891 400 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 AXLP30530 894 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 CASP4P49662 377 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 MCL1Q07820 350 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 RBL2Q08999 1139 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 TMEM62Q0P6H9 643 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 CCDC173Q0VFZ6 552 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 SNX17Q15036 470 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 TRIM71Q2Q1W2 868 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 MPZL3Q6UWV2 235 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 INTS8Q75QN2 995 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 APBB1IPQ7Z5R6 666 aaPredicted RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 CREBRFQ8IUR6 639 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 GPD1LQ8N335 351 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 BORCS6Q96GS4 357 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 PDLIM2Q96JY6 352 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 NOC4LQ9BVI4 516 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 PCIF1Q9H4Z3 704 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 PTPRHQ9HD43 1115 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 TRMT13Q9NUP7 481 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 TAB2Q9NYJ8 693 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 AGO2Q9UKV8 859 aaKnown RBP11.62□□□□□ -0.55
LEMD3-202ENST00000539442 GINS2Q9Y248 185 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 CDY2AQ9Y6F7 541 aa11.62□□□□□ -0.55
LEMD3-202ENST00000539442 ABLIM1O14639 778 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 B4GALT5O43286 388 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 EXTL3O43909 919 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 B4GALT4O60513 344 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 TSPAN1O60635 241 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 IQCF3P0C7M6 154 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 MCF2P10911 925 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 KRT13P13646 458 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 ARF4P18085 180 aaPredicted RBP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 MCCD1P59942 119 aaPredicted RBP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 MGAT3Q09327 533 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 NOLC1Q14978 699 aaKnown RBP eCLIP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 NR1I3Q14994 352 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 SNRNP35Q16560 246 aaKnown RBP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 KYAT1Q16773 422 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 TMEM132AQ24JP5 1023 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 VWA3BQ502W6 1294 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 FAM26DQ5JW98 314 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 C1orf53Q5VUE5 145 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 CATSPER4Q7RTX7 472 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 USP37Q86T82 979 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 FAM126BQ8IXS8 530 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 CCDC155Q8N6L0 562 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 CAGE1Q8TC20 777 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 DHX38Q92620 1227 aaKnown RBP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 WNT8BQ93098 351 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 NAP1L5Q96NT1 182 aaPredicted RBP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 MSTO1Q9BUK6 570 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 SENP6Q9GZR1 1112 aaPredicted RBP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 CDHR5Q9HBB8 845 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 ANKFY1Q9P2R3 1169 aa11.61□□□□□ -0.55
LEMD3-202ENST00000539442 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.61□□□□□ -0.55
LEMD3-202ENST00000539442 A0A1B0GUA9 196 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 ZNF233A6NK53 670 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 OGTO15294 1046 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 TLR3O15455 904 aaKnown RBP11.6□□□□□ -0.55
LEMD3-202ENST00000539442 COL6A1P12109 1028 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 THPOP40225 353 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 MATR3P43243 847 aaKnown RBP eCLIP11.6□□□□□ -0.55
LEMD3-202ENST00000539442 POU5F1Q01860 360 aaKnown RBP11.6□□□□□ -0.55
LEMD3-202ENST00000539442 BFSP1Q12934 665 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 DCAF4L1Q3SXM0 396 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 ZNF568Q3ZCX4 644 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 MIIPQ5JXC2 388 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 FKBP15Q5T1M5 1219 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 NOTUMQ6P988 496 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 TMC2Q8TDI7 906 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 TMEM40Q8WWA1 233 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 SAAL1Q96ER3 474 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 CCDC51Q96ER9 411 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 PPP1R9BQ96SB3 815 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 ADPGKQ9BRR6 497 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 TCHPQ9BT92 498 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 HAPLN2Q9GZV7 340 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 VPS16Q9H269 839 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 NDST4Q9H3R1 872 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 PDZD7Q9H5P4 517 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 AGPAT5Q9NUQ2 364 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 INTS13Q9NVM9 706 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 USP20Q9Y2K6 914 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 SQORQ9Y6N5 450 aa11.6□□□□□ -0.55
LEMD3-202ENST00000539442 A0A1W2PQC6 194 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 GOLGA8IPA6NC78 632 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 GOLGA8JA6NMD2 632 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 PES1O00541 588 aaKnown RBP11.59□□□□□ -0.55
LEMD3-202ENST00000539442 FAM189A1O60320 539 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 STX10O60499 249 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 CSDE1O75534 798 aaKnown RBP11.59□□□□□ -0.55
LEMD3-202ENST00000539442 CD4P01730 458 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 CHRNA1P02708 482 aa11.59□□□□□ -0.55
LEMD3-202ENST00000539442 AFPP02771 609 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms