RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SMUG1Q53HV7 270 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 ZNF362Q5T0B9 420 aaPredicted RBP13.25□□□□□ -0.29
USP3-203ENST00000538686 MEX3CQ5U5Q3 659 aaKnown RBP13.25□□□□□ -0.29
USP3-203ENST00000538686 FYB2Q5VWT5 728 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 NET1Q7Z628 596 aaPredicted RBP13.25□□□□□ -0.29
USP3-203ENST00000538686 JAMLQ86YT9 394 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 OR6Y1Q8NGX8 325 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 MRPL46Q9H2W6 279 aaKnown RBP13.25□□□□□ -0.29
USP3-203ENST00000538686 TRAF3IP3Q9Y228 551 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 HEY1Q9Y5J3 304 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 NUMBLQ9Y6R0 609 aa13.25□□□□□ -0.29
USP3-203ENST00000538686 USP6P35125 1406 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 FKBP6O75344 327 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 MUTP22033 750 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 SLC18A1P54219 525 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 GCKRQ14397 625 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 KYNUQ16719 465 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 PCNX4Q63HM2 1172 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 DHRS4L2Q6PKH6 230 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 CLNKQ7Z7G1 428 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 PDSS2Q86YH6 399 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 TPCN2Q8NHX9 752 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 DDI1Q8WTU0 396 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 HSPBAP1Q96EW2 488 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP3-203ENST00000538686 MRPS26Q9BYN8 205 aaKnown RBP13.24□□□□□ -0.29
USP3-203ENST00000538686 TRPC7Q9HCX4 862 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 ARMCX3Q9UH62 379 aaPredicted RBP13.24□□□□□ -0.29
USP3-203ENST00000538686 NEURL1BA8MQ27 555 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 CYTH3O43739 400 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 MAGEC1O60732 1142 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 TRMUO75648 421 aaKnown RBP13.24□□□□□ -0.29
USP3-203ENST00000538686 CIB2O75838 187 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 IRX4P78413 519 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 PPP2R5CQ13362 524 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 SLC39A6Q13433 755 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 THOC5Q13769 683 aaKnown RBP13.24□□□□□ -0.29
USP3-203ENST00000538686 SEPT6Q14141 434 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 ZNF174Q15697 407 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 FOXR2Q6PJQ5 311 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 RASSF3Q86WH2 238 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 ALLCQ8N6M5 410 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 NKX2-3Q8TAU0 364 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 HES6Q96HZ4 224 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 NSL1Q96IY1 281 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 BIRC8Q96P09 236 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 CCT7Q99832 543 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 PHF20Q9BVI0 1012 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 CNNM2Q9H8M5 875 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 DDX18Q9NVP1 670 aaKnown RBP13.24□□□□□ -0.29
USP3-203ENST00000538686 UVRAGQ9P2Y5 699 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 LGALS13Q9UHV8 139 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 TDRKHQ9Y2W6 561 aaKnown RBP13.24□□□□□ -0.29
USP3-203ENST00000538686 GIT1Q9Y2X7 761 aa13.24□□□□□ -0.29
USP3-203ENST00000538686 LRP6O75581 1613 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 ADAMTS13Q76LX8 1427 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 CCDC160A6NGH7 325 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 UBE2Q2LH0YL09 131 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 ZNF862O60290 1169 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 EDF1O60869 148 aaKnown RBP13.23□□□□□ -0.29
USP3-203ENST00000538686 CLPTM1O96005 669 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 FGGP02679 453 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 ZNF12P17014 697 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 CHRNA3P32297 505 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 PHBP35232 272 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 KLHL30Q0D2K2 578 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 NR1H3Q13133 447 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 CTC1Q2NKJ3 1217 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 CNNM4Q6P4Q7 775 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 CYFIP1Q7L576 1253 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 OTUD6AQ7L8S5 288 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 NLRP9Q7RTR0 991 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 LRRC49Q8IUZ0 686 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 TBC1D10CQ8IV04 446 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 SCYL3Q8IZE3 742 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 CCDC82Q8N4S0 544 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 PYROXD1Q8WU10 500 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 PTCD3Q96EY7 689 aaKnown RBP13.23□□□□□ -0.29
USP3-203ENST00000538686 BTBD9Q96Q07 612 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 FHDC1Q9C0D6 1143 aaPredicted RBP13.23□□□□□ -0.29
USP3-203ENST00000538686 RBM38Q9H0Z9 239 aaKnown RBP13.23□□□□□ -0.29
USP3-203ENST00000538686 UBN1Q9NPG3 1134 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 KBTBD4Q9NVX7 518 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 GRHL1Q9NZI5 618 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 AMFRQ9UKV5 643 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 PFASO15067 1338 aa13.23□□□□□ -0.29
USP3-203ENST00000538686 A0A087X0T9 212 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 FAM47DPA6NHR8 397 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 B4E1Z4 1266 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 GPAA1O43292 621 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 TPPPO94811 219 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 OR6B1O95007 311 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 IGKV5-2P06315 115 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 FAM228BP0C875 321 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 CYP2C9P11712 490 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 FGFR4P22455 802 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 POLR2FP61218 127 aaKnown RBP13.22□□□□□ -0.29
USP3-203ENST00000538686 ASIC2Q16515 512 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 HLFQ16534 295 aa13.22□□□□□ -0.29
USP3-203ENST00000538686 FAM83BQ5T0W9 1011 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms