RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DNAJB4Q9UDY4 337 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 INPP5FQ9Y2H2 1132 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 ATP6V1DQ9Y5K8 247 aa14.26□□□□□ -0.13
VPS28-216ENST00000533806 VCANP13611 3396 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 FAM237AA0A1B0GTK4 181 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 H0YCG3 227 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 FSCN2O14926 492 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 TOM1L1O75674 476 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 PPP1R37O75864 691 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 FAM13AO94988 1023 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 EFEMP2O95967 443 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 POMCP01189 267 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 PIGRP01833 764 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 CMA1P23946 247 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 IRS1P35568 1242 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 PPM1AP35813 382 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 MLH1P40692 756 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 SLC11A1P49279 550 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 ALDH7A1P49419 539 aaKnown RBP14.25□□□□□ -0.13
VPS28-216ENST00000533806 ERVFC1P60507 584 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 NUCB2P80303 420 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 NAB2Q15742 525 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 DCAF4L1Q3SXM0 396 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 SPOUT1Q5T280 376 aaKnown RBP14.25□□□□□ -0.13
VPS28-216ENST00000533806 ADALQ6DHV7 355 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 ALKAL1Q6UXT8 129 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 ZNF720Q7Z2F6 126 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 TMEM173Q86WV6 379 aaPredicted RBP14.25□□□□□ -0.13
VPS28-216ENST00000533806 COLGALT2Q8IYK4 626 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 HACE1Q8IYU2 909 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 IQUBQ8NA54 791 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 URGCPQ8TCY9 931 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 BCL7CQ8WUZ0 217 aaPredicted RBP14.25□□□□□ -0.13
VPS28-216ENST00000533806 PPM1EQ8WY54 764 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 MRPS27Q92552 414 aaKnown RBP14.25□□□□□ -0.13
VPS28-216ENST00000533806 SPATA32Q96LK8 384 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 ADPGKQ9BRR6 497 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 HAPLN2Q9GZV7 340 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 CXCL16Q9H2A7 254 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 TNMDQ9H2S6 317 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 SEL1LQ9UBV2 794 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 TBX20Q9UMR3 447 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 HPSEQ9Y251 543 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 NLRC5Q86WI3 1866 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 KIAA1671Q9BY89 1806 aa14.25□□□□□ -0.13
VPS28-216ENST00000533806 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 CARNS1A5YM72 827 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 PTGESO14684 152 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 POLR2DO15514 142 aaKnown RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 MEFVO15553 781 aaPredicted RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 ZC3H11AO75152 810 aaKnown RBP eCLIP14.24□□□□□ -0.137e-6■■■■■ 33.7
VPS28-216ENST00000533806 TBCAO75347 108 aaKnown RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 KRT18P05783 430 aaKnown RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 MCF2P10911 925 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 NMT1P30419 496 aaKnown RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 GRM5P41594 1212 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 SCNN1GP51170 649 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 MCL1Q07820 350 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 STRN3Q13033 797 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 TIGD5Q53EQ6 642 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 XKR4Q5GH76 650 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 TCEAL5Q5H9L2 206 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 MPZL3Q6UWV2 235 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 MAP4K3Q8IVH8 894 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 THNSL1Q8IYQ7 743 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 MICALL1Q8N3F8 863 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 CEP120Q8N960 986 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 IGSF21Q96ID5 467 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 ZBTB45Q96K62 511 aaPredicted RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 TMEM175Q9BSA9 504 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 APOL6Q9BWW8 343 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 VN1R3Q9BXE9 311 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 TRIM9Q9C026 710 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 SCAND2PQ9GZW5 306 aaPredicted RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 NSUN3Q9H649 340 aaKnown RBP14.24□□□□□ -0.13
VPS28-216ENST00000533806 OLFML3Q9NRN5 406 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 SNTG2Q9NY99 539 aa14.24□□□□□ -0.13
VPS28-216ENST00000533806 NT5C1B-RDH14C9J2C7 533 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 NRP1O14786 923 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 FAM189A1O60320 539 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 RECQL4O94761 1208 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 GAP43P17677 238 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 RNASELQ05823 741 aaKnown RBP14.23□□□□□ -0.13
VPS28-216ENST00000533806 CTC1Q2NKJ3 1217 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 ZC2HC1CQ53FD0 456 aaPredicted RBP14.23□□□□□ -0.13
VPS28-216ENST00000533806 SLC39A4Q6P5W5 647 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 SFR1Q86XK3 245 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 FAM178BQ8IXR5 827 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 SLC17A8Q8NDX2 589 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 STAMQ92783 540 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 DHX58Q96C10 678 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 C7orf25Q9BPX7 421 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 KLK14Q9P0G3 267 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 PARP2Q9UGN5 583 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 KCNH3Q9ULD8 1083 aa14.23□□□□□ -0.13
VPS28-216ENST00000533806 K7ENM7 598 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 ACTN4O43707 911 aaKnown RBP14.22□□□□□ -0.13
VPS28-216ENST00000533806 ALDH2P05091 517 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 ABCD1P33897 745 aa14.22□□□□□ -0.13
VPS28-216ENST00000533806 KRT17Q04695 432 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms