RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RNF10Q8N5U6 811 aaKnown RBP6.03□□□□□ -1.44
CD44-236ENST00000533222 SMC1BQ8NDV3 1235 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 BRSK1Q8TDC3 778 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 SDCCAG3Q96C92 435 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 ZNF653Q96CK0 615 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 CFAP36Q96G28 342 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 CTAGE1Q96RT6 745 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 RPS6KC1Q96S38 1066 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 CCDC28BQ9BUN5 200 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 PARD6BQ9BYG5 372 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 TRIM5Q9C035 493 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 PDGFDQ9GZP0 370 aaPredicted RBP6.03□□□□□ -1.44
CD44-236ENST00000533222 ALDH8A1Q9H2A2 487 aaPredicted RBP6.03□□□□□ -1.44
CD44-236ENST00000533222 TNMDQ9H2S6 317 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 DCTPP1Q9H773 170 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 SLC52A2Q9HAB3 445 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 RXFP1Q9HBX9 757 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 LMBRD1Q9NUN5 540 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 FKBP14Q9NWM8 211 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 NDUFA13Q9P0J0 144 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 TTC7AQ9ULT0 858 aaPredicted RBP6.03□□□□□ -1.44
CD44-236ENST00000533222 SATB2Q9UPW6 733 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 PRELID1Q9Y255 219 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 PCDHA2Q9Y5H9 948 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 NPFFR2Q9Y5X5 522 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 SLC4A7Q9Y6M7 1214 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 CARMIL1Q5VZK9 1371 aa6.03□□□□□ -1.44
CD44-236ENST00000533222 FYCO1Q9BQS8 1478 aa6.02□□□□□ -1.44
CD44-236ENST00000533222 ATAD2BQ9ULI0 1458 aa6.02□□□□□ -1.44
CD44-236ENST00000533222 TLDC2A0PJX2 215 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 GTPBP10A4D1E9 387 aaKnown RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 CCDC151A5D8V7 595 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 WTIPA6NIX2 430 aaPredicted RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 LRRIQ3A6PVS8 624 aaPredicted RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 EFCAB8A8MWE9 144 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 M0R2C6 588 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 EBAG9O00559 213 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 CPLX1O14810 134 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 SRGAP3O43295 1099 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 MBD4O95243 580 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 RAPGEF3O95398 923 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ASMTLO95671 621 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 CAVIN2O95810 425 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 FGAP02671 866 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 IBSPP21815 317 aaPredicted RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 OAS2P29728 719 aaKnown RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 KRT9P35527 623 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 BCL6P41182 706 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 TSPAN7P41732 249 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 CASP2P42575 452 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 MAGEA10P43363 369 aaPredicted RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 PMS2P54278 862 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 AKAP17AQ02040 695 aaKnown RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 SNX1Q13596 522 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 DPYSQ14117 519 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 KCNB1Q14721 858 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 SEPT2Q15019 361 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 BRD3Q15059 726 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 PTPROQ16827 1216 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 SGSM1Q2NKQ1 1148 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 SDE2Q6IQ49 451 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 C8orf74Q6P047 294 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 GALNT18Q6P9A2 607 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 NCCRP1Q6ZVX7 275 aaPredicted RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 ZSWIM9Q86XI8 627 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 CEP57L1Q8IYX8 460 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 LILRA2Q8N149 483 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 SLC7A14Q8TBB6 771 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 WDR66Q8TBY9 1149 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 FAM71BQ8TC56 605 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ANKRD49Q8WVL7 239 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ZFPM2Q8WW38 1151 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ATRIPQ8WXE1 791 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 IFT81Q8WYA0 676 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 KAT2BQ92831 832 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 GFM2Q969S9 779 aaKnown RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 CLUHP3Q96NS8 147 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 FAM167BQ9BTA0 163 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 NACAP1Q9BZK3 213 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 SLC7A5P2Q9GIP4 190 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 GOLPH3LQ9H4A5 285 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ZHX3Q9H4I2 956 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ACTR5Q9H9F9 607 aaPredicted RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 EBF2Q9HAK2 575 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 NCOA5Q9HCD5 579 aaKnown RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 TBCCD1Q9NVR7 557 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 IL1RAPL1Q9NZN1 696 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 MARCH2Q9P0N8 246 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 CTNNAL1Q9UBT7 734 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 HESX1Q9UBX0 185 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ZNF69Q9UC07 566 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 STK39Q9UEW8 545 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 STAP2Q9UGK3 403 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 NDOR1Q9UHB4 597 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 ACSL6Q9UKU0 697 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 TMA7Q9Y2S6 64 aaKnown RBP6.02□□□□□ -1.45
CD44-236ENST00000533222 SPO11Q9Y5K1 396 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 CLASP1Q7Z460 1538 aa6.02□□□□□ -1.45
CD44-236ENST00000533222 TRBV23OR9-2A0A075B6M9 112 aa6.01□□□□□ -1.45
CD44-236ENST00000533222 ZNF503-AS2A6NEH8 195 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms