RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	NAMPT	P43490	491 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	NPTX2	P47972	431 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	MARS	P56192	900 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	ETF1	P62495	437 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	TUBB2A	Q13885	445 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	SYCP1	Q15431	976 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	VWA3B	Q502W6	1294 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	ODR4	Q5SWX8	454 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	MTERF4	Q7Z6M4	381 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	ZBTB8OS	Q8IWT0	167 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	RPUSD2	Q8IZ73	545 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	MYCT1	Q8N699	235 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	SLC17A8	Q8NDX2	589 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	CPLX3	Q8WVH0	158 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	TMEM40	Q8WWA1	233 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	SEPT8	Q92599	483 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	PPP1R13B	Q96KQ4	1090 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	TUBB2B	Q9BVA1	445 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	NUCKS1	Q9H1E3	243 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	AGO3	Q9H9G7	860 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	PARVG	Q9HBI0	331 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	IL23A	Q9NPF7	189 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	KMT5A	Q9NQR1	393 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	OLFML3	Q9NRN5	406 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	PPP2R2C	Q9Y2T4	447 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	NOC2L	Q9Y3T9	749 aa	Known RBP	10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	LOXHD1	Q8IVV2	1947 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	TANC1	Q9C0D5	1861 aa		10.32	□□□□□ -0.76
NXF1-209	ENST00000531474	LTBP2	Q14767	1821 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	UQCRHL	A0A096LP55	91 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	INO80B-WBP1	J3KQ70	363 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	PDXK	O00764	312 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	SLC16A4	O15374	487 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	CXCL10	P02778	98 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	GYPC	P04921	128 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	UQCRH	P07919	91 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	MAPT	P10636	758 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	TRIM21	P19474	475 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	FGFR4	P22455	802 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	ZNF131	P52739	623 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	SMTN	P53814	917 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	EPHB4	P54760	987 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	PTEN	P60484	403 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	ZBED6	P86452	979 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	NFX1	Q12986	1120 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	ALCAM	Q13740	583 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	GPNMB	Q14956	572 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	KNOP1	Q1ED39	458 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	CDCA2	Q69YH5	1023 aa	Predicted RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	CATSPER4	Q7RTX7	472 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	FAM228A	Q86W67	206 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	SFR1	Q86XK3	245 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	CCDC170	Q8IYT3	715 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	USP38	Q8NB14	1042 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	IFIH1	Q9BYX4	1025 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	INO80B	Q9C086	356 aa	Predicted RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	C2orf40	Q9H1Z8	148 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	NDST4	Q9H3R1	872 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	MINDY3	Q9H8M7	445 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	C17orf75	Q9HAS0	396 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	IFT122	Q9HBG6	1241 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	METTL14	Q9HCE5	456 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	ABHD10	Q9NUJ1	306 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	TBC1D7	Q9P0N9	293 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	LARS	Q9P2J5	1176 aa	Known RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	KCNG1	Q9UIX4	513 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	PADI3	Q9ULW8	664 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	TRAF3IP3	Q9Y228	551 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	PCDHB13	Q9Y5F0	798 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	SQOR	Q9Y6N5	450 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	TRIP12	Q14669	1992 aa	Predicted RBP	10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	KAT6A	Q92794	2004 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	UBE4B	O95155	1302 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474	ADGRA3	Q8IWK6	1321 aa		10.31	□□□□□ -0.76
NXF1-209	ENST00000531474		K7ENM7	598 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	GPR182	O15218	404 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	ERLIN2	O94905	339 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	PFKM	P08237	780 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	KRT83	P78385	493 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	CDK17	Q00537	523 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	MBTD1	Q05BQ5	628 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	POU5F1B	Q06416	359 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	ADAM9	Q13443	819 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	NFIL3	Q16649	462 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	BMT2	Q1RMZ1	405 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	CCDC40	Q4G0X9	1142 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	ZCWPW2	Q504Y3	356 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	PLEKHG4	Q58EX7	1191 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	CNKSR3	Q6P9H4	555 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	SRGAP1	Q7Z6B7	1085 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	FRMD5	Q7Z6J6	570 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	REXO1L1P	Q8IX06	675 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	FAM178B	Q8IXR5	827 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	ZC3H3	Q8IXZ2	948 aa	Known RBP	10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	TXLNB	Q8N3L3	684 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	DBF4B	Q8NFT6	615 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	GOLGA5	Q8TBA6	731 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	SPIRE2	Q8WWL2	714 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	APBB2	Q92870	758 aa		10.3	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms