RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 COL4A3BPQ9Y5P4 624 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 SYNRGQ9UMZ2 1314 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 EVPLQ92817 2033 aa8.18□□□□□ -1.1
CD44-228ENST00000528455 RANBP2P49792 3224 aaKnown RBP8.18□□□□□ -1.1
CD44-228ENST00000528455 TRIOBPQ9H2D6 2365 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 FRMD3A2A2Y4 597 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ZBTB42B2RXF5 422 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 KLRC4O43908 158 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 CAVIN2O95810 425 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 KRT18P05783 430 aaKnown RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 ASGR1P07306 291 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 MAPTP10636 758 aaKnown RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 GAP43P17677 238 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 PTGS1P23219 599 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 KLRC1P26715 233 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 TMOD1P28289 359 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ABCD1P33897 745 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 PPP1R2P41236 205 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 DNM2P50570 870 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ZNF131P52739 623 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ACLYP53396 1101 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ZNF445P59923 1031 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ADAM17P78536 824 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 POU5F1BQ06416 359 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 EHHADHQ08426 723 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 TBC1D8BQ0IIM8 1120 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 LRRC41Q15345 812 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 KIAA0753Q2KHM9 967 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 MTERF2Q49AM1 385 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 EFHC2Q5JST6 749 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ZNF658Q5TYW1 1059 aaPredicted RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 IER5Q5VY09 327 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 NFRKBQ6P4R8 1299 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 LRRC69Q6ZNQ3 347 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 DYMQ7RTS9 669 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 SESTD1Q86VW0 696 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 MLKLQ8NB16 471 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 TCP11Q8WWU5 503 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 SLC7A3Q8WY07 619 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 KIFAP3Q92845 792 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 ZNF775Q96BV0 537 aaPredicted RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 HSH2DQ96JZ2 352 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 SUSD3Q96L08 255 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 DRC1Q96MC2 740 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 CCDC43Q96MW1 224 aaKnown RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 ZCCHC2Q9C0B9 1178 aaKnown RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 BLZF1Q9H2G9 400 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 KLK14Q9P0G3 267 aa8.17□□□□□ -1.1
CD44-228ENST00000528455 LARSQ9P2J5 1176 aaKnown RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 ZMYND8Q9ULU4 1186 aaPredicted RBP8.17□□□□□ -1.1
CD44-228ENST00000528455 A0A1W2PPC1 479 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 CDC14CA4D256 554 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 TNFRSF10BO14763 440 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 RPLP2P05387 115 aaKnown RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 CCDC192P0DO97 292 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 VSIG8P0DPA2 414 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 MARK3P27448 753 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 HOXC8P31273 242 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 BMP8BP34820 402 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 ARL2P36404 184 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 FXR1P51114 621 aaKnown RBP eCLIP8.16□□□□□ -1.1
CD44-228ENST00000528455 POLGP54098 1239 aaPredicted RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 NLRP12P59046 1061 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 ASIC1P78348 528 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 NFX1Q12986 1120 aaKnown RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 MORC3Q14149 939 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 MXD4Q14582 209 aaPredicted RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 TRIP12Q14669 1992 aaPredicted RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 LRRC26Q2I0M4 334 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 C11orf91Q3C1V1 193 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 COBLL1Q53SF7 1204 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 HERC4Q5GLZ8 1057 aaPredicted RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 FRMPD3Q5JV73 1810 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 MARCH8Q5T0T0 291 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 EFCAB12Q6NXP0 572 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 MTHFD1LQ6UB35 978 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 LRSAM1Q6UWE0 723 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 CXCL17Q6UXB2 119 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 TRMT1LQ7Z2T5 733 aaKnown RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 GRAMD1CQ8IYS0 662 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 NME8Q8N427 588 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 C7orf31Q8N865 590 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 KCNN1Q92952 543 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 LENG1Q96BZ8 264 aaPredicted RBP8.16□□□□□ -1.1
CD44-228ENST00000528455 ALPK3Q96L96 1907 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 GLT1D1Q96MS3 346 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 REEP2Q9BRK0 252 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 RUSC1Q9BVN2 902 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 PRO3102Q9H379 93 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 ST6GALNAC4Q9H4F1 302 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 ATP6V0A4Q9HBG4 840 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 PARVGQ9HBI0 331 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 OLFML3Q9NRN5 406 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 ANO10Q9NW15 660 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 PCDHA2Q9Y5H9 948 aa8.16□□□□□ -1.1
CD44-228ENST00000528455 SCN10AQ9Y5Y9 1956 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 ARID2Q68CP9 1835 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 NPHP3-ACAD11A0A0J9YXS1 232 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SMIM35A0A1B0GVV1 85 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SYCE3A1L190 88 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms