RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SLC30A5Q8TAD4 765 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 CPA4Q9UI42 421 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 PLXNA1Q9UIW2 1896 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.43■■□□□ 1.18
VPS28-209ENST00000528142 GPC3P51654 580 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 NLRP11P59045 1033 aaKnown RBP22.43■■□□□ 1.18
VPS28-209ENST00000528142 BMS1Q14692 1282 aaKnown RBP22.43■■□□□ 1.18
VPS28-209ENST00000528142 KIF22Q14807 665 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 ARHGAP44Q17R89 818 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 WHAMMP3Q1A5X7 153 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 ZPBP2Q6X784 338 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 C15orf39Q6ZRI6 1047 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 SV2AQ7L0J3 742 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 AFG1LQ8WV93 481 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 TINF2Q9BSI4 451 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 PACSIN1Q9BY11 444 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 HDAC6Q9UBN7 1215 aa22.43■■□□□ 1.18
VPS28-209ENST00000528142 ATP8B3O60423 1300 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 MSCO60682 206 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 CCDC172P0C7W6 258 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 KLRC1P26715 233 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 KIAA0753Q2KHM9 967 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 ALKBH5Q6P6C2 394 aaKnown RBP22.42■■□□□ 1.18
VPS28-209ENST00000528142 RSRC2Q7L4I2 434 aaKnown RBP22.42■■□□□ 1.18
VPS28-209ENST00000528142 SRGAP1Q7Z6B7 1085 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 VPS36Q86VN1 386 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 IFNL1Q8IU54 200 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 CEP112Q8N8E3 955 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 ZCCHC17Q9NP64 241 aaKnown RBP22.42■■□□□ 1.18
VPS28-209ENST00000528142 SUCLA2Q9P2R7 463 aaPredicted RBP22.42■■□□□ 1.18
VPS28-209ENST00000528142 JRKLQ9Y4A0 524 aa22.42■■□□□ 1.18
VPS28-209ENST00000528142 TTLL13PA6NNM8 815 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 BTNL10A8MVZ5 291 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 C22orf31O95567 290 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 TFRCP02786 760 aaKnown RBP22.41■■□□□ 1.18
VPS28-209ENST00000528142 SRGAP2CP0DJJ0 459 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 DLATP10515 647 aaKnown RBP22.41■■□□□ 1.18
VPS28-209ENST00000528142 SMPD1P17405 629 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 YY1P25490 414 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 WNT7BP56706 349 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 ZNF484Q5JVG2 852 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 CYP4F22Q6NT55 531 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 RNF149Q8NC42 400 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 FBXL13Q8NEE6 735 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 LNX1Q8TBB1 728 aaPredicted RBP22.41■■□□□ 1.18
VPS28-209ENST00000528142 TAS1R2Q8TE23 839 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 UBXN4Q92575 508 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 ZNF516Q92618 1163 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 NOX5Q96PH1 765 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 ABHD16BQ9H3Z7 469 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 LDHAP00338 332 aaKnown RBP22.41■■□□□ 1.18
VPS28-209ENST00000528142 ACOT2P49753 483 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 ACVR2BQ13705 512 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 HSP90AA2PQ14568 343 aaPredicted RBP22.41■■□□□ 1.18
VPS28-209ENST00000528142 DUSP28Q4G0W2 176 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 MORN1Q5T089 497 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 MSL3Q8N5Y2 521 aaKnown RBP22.41■■□□□ 1.18
VPS28-209ENST00000528142 KAT5Q92993 513 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 HHIPL1Q96JK4 782 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 C16orf70Q9BSU1 422 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 MSTO1Q9BUK6 570 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 RAB20Q9NX57 234 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 SAR1BQ9Y6B6 198 aa22.41■■□□□ 1.18
VPS28-209ENST00000528142 PPFIA4O75335 1185 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 INSRRP14616 1297 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 ZBTB41Q5SVQ8 909 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 EFCAB12Q6NXP0 572 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 HELQQ8TDG4 1101 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 ZBTB10Q96DT7 871 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 KREMEN1Q96MU8 473 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 ALS2CR12Q96Q35 445 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 C2orf40Q9H1Z8 148 aa22.4■■□□□ 1.18
VPS28-209ENST00000528142 HOXD8P13378 290 aaPredicted RBP22.39■■□□□ 1.17
VPS28-209ENST00000528142 IQSEC1Q6DN90 963 aa22.39■■□□□ 1.17
VPS28-209ENST00000528142 RHPN2Q8IUC4 686 aa22.39■■□□□ 1.17
VPS28-209ENST00000528142 ZBTB8OSQ8IWT0 167 aa22.39■■□□□ 1.17
VPS28-209ENST00000528142 CCDC102AQ96A19 550 aa22.39■■□□□ 1.17
VPS28-209ENST00000528142 MRPL4Q9BYD3 311 aaKnown RBP22.39■■□□□ 1.17
VPS28-209ENST00000528142 ANKFY1Q9P2R3 1169 aa22.39■■□□□ 1.17
VPS28-209ENST00000528142 BUB1O43683 1085 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 CLCN3P51790 818 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 GRM1Q13255 1194 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 LINC01465Q8N7H1 131 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 ACO2Q99798 780 aaKnown RBP22.38■■□□□ 1.17
VPS28-209ENST00000528142 PDE11AQ9HCR9 933 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 SLC5A4Q9NY91 659 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 PUF60Q9UHX1 559 aaKnown RBP22.38■■□□□ 1.17
VPS28-209ENST00000528142 INTUQ9ULD6 942 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 ZNF236Q9UL36 1845 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 TULP1O00294 542 aaPredicted RBP22.38■■□□□ 1.17
VPS28-209ENST00000528142 ABLIM1O14639 778 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 ASAP2O43150 1006 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 FAM189A1O60320 539 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 TOM1L1O75674 476 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 C4BPAP04003 597 aaKnown RBP22.38■■□□□ 1.17
VPS28-209ENST00000528142 PRKCBP05771 671 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 GJB1P08034 283 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 CHMP4BP1P59074 171 aa22.38■■□□□ 1.17
VPS28-209ENST00000528142 PRPF4BQ13523 1007 aaKnown RBP22.38■■□□□ 1.17
VPS28-209ENST00000528142 TFDP1Q14186 410 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms