RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PLAC9Q5JTB6 97 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM209AQ5JX71 171 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPDYAQ5MJ70 313 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 WDR45BQ5MNZ6 344 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RTP2Q5QGT7 225 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF362Q5T0B9 420 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR158Q5T848 1215 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 INTS11Q5TA45 600 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PIK3R6Q5UE93 754 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABHD17BQ5VST6 288 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXB2Q5VYV0 432 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TDRD10Q5VZ19 366 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 JAKMIP3Q5VZ66 844 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 BTBD8Q5XKL5 378 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZKSCAN2Q63HK3 967 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TSHZ3Q63HK5 1081 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SUMO4Q6EEV6 95 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GTF2IRD2BQ6EKJ0 949 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAAH2Q6GMR7 532 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRAMD4Q6IC98 578 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MRM1Q6IN84 353 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CC2D1AQ6P1N0 951 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CFAP161Q6P656 301 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 C1orf228Q6PIY5 440 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 LVRNQ6Q4G3 990 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NSMFQ6X4W1 530 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RUFY4Q6ZNE9 571 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM43BQ6ZT52 329 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP53Q70EK8 1073 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCTD1Q719H9 257 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 BRINP3Q76B58 766 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RSRC2Q7L4I2 434 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CHST15Q7LFX5 561 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 OTOP3Q7RTS5 596 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 LIMS2Q7Z4I7 341 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPRED1Q7Z699 444 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SRGAP1Q7Z6B7 1085 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBE3DQ7Z6J8 389 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CATIPQ7Z7H3 387 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SRLQ86TD4 932 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DPP9Q86TI2 863 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX53Q86TM3 631 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GTF2IRD2Q86UP8 949 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM83AQ86UY5 434 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 C11orf74Q86VG3 221 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMPRSS6Q8IU80 811 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLXDC1Q8IUK5 500 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANKRD18AQ8IVF6 992 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TPH2Q8IWU9 490 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SUGP1Q8IWZ8 645 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM192Q8IY95 271 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ULK2Q8IYT8 1036 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FUKQ8N0W3 1084 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLASRPQ8N2M8 674 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CPA6Q8N4T0 437 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NKAPQ8N5F7 415 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CNTD1Q8N815 330 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DTX3Q8N9I9 347 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TP53I13Q8NBR0 393 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NAXEQ8NCW5 288 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GSTCDQ8NEC7 633 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NGDNQ8NEJ9 315 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DNERQ8NFT8 737 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 OR2W6PQ8NHA6 318 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FBXO27Q8NI29 283 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC35G2Q8TBE7 412 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 Q8TCH9 128 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PROKR1Q8TCW9 393 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPIL4Q8WUA2 492 aaKnown RBP eCLIP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NUP133Q8WUM0 1156 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCT6BQ92526 530 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RABGGTAQ92696 567 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 COPS5Q92905 334 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPRN2Q92932 1015 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 USP7Q93009 1102 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FBXW5Q969U6 566 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TIFAQ96CG3 184 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MTMR8Q96EF0 704 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FUBP3Q96I24 572 aaKnown RBP eCLIP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAXDC2Q96IV6 333 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 WNK4Q96J92 1243 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAML3Q96JK9 1138 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 HIST1H2AHQ96KK5 128 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 EXOC2Q96KP1 924 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAGEB10Q96LZ2 347 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FGD4Q96M96 766 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 COQ10AQ96MF6 247 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPM1MQ96MI6 270 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLUHP3Q96NS8 147 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 UIMC1Q96RL1 719 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SERINC2Q96SA4 455 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SMAD5Q99717 465 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 HIST1H2AJQ99878 128 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDCD2LQ9BRP1 358 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 AARSD1Q9BTE6 412 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTPALQ9BTX7 342 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ISCA1Q9BUE6 129 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DUSP26Q9BV47 211 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SEMA4CQ9C0C4 833 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX24Q9GZR7 859 aaKnown RBP eCLIP0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms