RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SFNP31947 248 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 ABCD1P33897 745 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 CASP7P55210 303 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 YWHAGP61981 247 aaKnown RBP eCLIP13.99□□□□□ -0.17
TCOF1-213ENST00000514442 CDR2Q01850 454 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 NFIAQ12857 509 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 BAATQ14032 418 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-213ENST00000514442 STYK1Q6J9G0 422 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 FAM47EQ6ZV65 393 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 CASKIN2Q8WXE0 1202 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 UBXN6Q9BZV1 441 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 TBK1Q9UHD2 729 aa13.99□□□□□ -0.17
TCOF1-213ENST00000514442 PACSIN2Q9UNF0 486 aaPredicted RBP13.99□□□□□ -0.17
TCOF1-213ENST00000514442 ESRRAP11474 423 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 HOXA7P31268 230 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 PHBP35232 272 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 SERPINB4P48594 390 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 CCNHP51946 323 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 ZNF568Q3ZCX4 644 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 CCT6BQ92526 530 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 BCAP29Q9UHQ4 241 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 MAD2L2Q9UI95 211 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 SRRM3A6NNA2 597 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 SAT1P21673 171 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 CDO1Q16878 200 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 ZNF746Q6NUN9 644 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 FAM151AQ8WW52 585 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 CFAP57Q96MR6 1250 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 MRPL47Q9HD33 250 aaKnown RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 MAGED2Q9UNF1 606 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 NOC2LQ9Y3T9 749 aaKnown RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 ECEL1O95672 775 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 GSTA2P09210 222 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 SRGNP10124 158 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 SPATA33Q96N06 139 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 PODXLO00592 558 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 MED7O43513 233 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 LPXNO60711 386 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 RFC1P35251 1148 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 SLC12A2P55011 1212 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 HERVK_113P62684 666 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 ZNF513Q8N8E2 541 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-213ENST00000514442 MAGEC3Q8TD91 643 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 FAM81BQ96LP2 452 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 PDP2Q9P2J9 529 aa13.98□□□□□ -0.17
TCOF1-213ENST00000514442 VAMP7P51809 220 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 TROAPQ12815 778 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 CYP4F22Q6NT55 531 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 CRELD2Q6UXH1 353 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 FAM167AQ96KS9 214 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 SLC38A10Q9HBR0 1119 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 MYOZ2Q9NPC6 264 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 EPHA7Q15375 998 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 LMBRD2Q68DH5 695 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 TMEM270Q6UE05 265 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 OR6B3Q8NGW1 331 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 DNAJC7Q99615 494 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 CCSER1Q9C0I3 900 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 AGPAT5Q9NUQ2 364 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 LDHAP00338 332 aaKnown RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 NAALADL2Q58DX5 795 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 ZNF667Q5HYK9 610 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 LRRC34Q8IZ02 419 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 GABPB2Q8TAK5 448 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 ZWILCHQ9H900 591 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 SLC9A2Q9UBY0 812 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 L3MBTL1Q9Y468 752 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 ACSL3O95573 720 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 EYA4O95677 639 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 PDIA5Q14554 519 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 TTLL4Q14679 1199 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 SLC10A5Q5PT55 438 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 PDZD4Q76G19 769 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 GIMAP8Q8ND71 665 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 CCNYQ8ND76 341 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 MDM1Q8TC05 714 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 PSPC1Q8WXF1 523 aaKnown RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 INTS2Q9H0H0 1204 aaKnown RBP13.97□□□□□ -0.17
TCOF1-213ENST00000514442 MLXIPLQ9NP71 852 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 PCDHA10Q9Y5I2 948 aa13.97□□□□□ -0.17
TCOF1-213ENST00000514442 WDR46O15213 610 aaKnown RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 YWHABP31946 246 aaKnown RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 COG2Q14746 738 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 METTL23Q86XA0 190 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 SPON1Q9HCB6 807 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 DNAJC17Q9NVM6 304 aaKnown RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 LRFN2Q9ULH4 789 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 CORO1CQ9ULV4 474 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 PDS5AQ29RF7 1337 aaKnown RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 NWD1Q149M9 1564 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 SPAG7O75391 227 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 ATP4AP20648 1035 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 SSTR3P32745 418 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 SPARCL1Q14515 664 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 SURF1Q15526 300 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 HAUS6Q7Z4H7 955 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 KCTD6Q8NC69 237 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 CYTH2Q99418 400 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 LRRC4Q9HBW1 653 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms