RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CIITAP33076 1130 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 ASIC1P78348 528 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 Q4G0T1 1027 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 HERC4Q5GLZ8 1057 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 HHATQ5VTY9 493 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 KIRREL3Q8IZU9 778 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 USP38Q8NB14 1042 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 FAM210AQ96ND0 272 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 NXF3Q9H4D5 531 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 KCNMB3Q9NPA1 279 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 CLDND1Q9NY35 253 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 MYH9P35579 1960 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 K7ENM7 598 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 HAS3O00219 553 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 ENPP3O14638 875 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 MLH1P40692 756 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 GPC3P51654 580 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 ZNF484Q5JVG2 852 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 MAFAQ8NHW3 353 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 N4BP2L2Q92802 583 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 ZNF396Q96N95 335 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 NACC1Q96RE7 527 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 CRACR2AQ9BSW2 395 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 TSPYL2Q9H2G4 693 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 KMT5AQ9NQR1 393 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 ENTPD7Q9NQZ7 604 aa8.61□□□□□ -1.03
LIMCH1-219ENST00000514096 M0R2N6 131 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 EPB41L2O43491 1005 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 IGHA2P01877 340 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PLA2G4BP0C869 781 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 ZSCAN22P10073 491 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 SCNN1GP51170 649 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 GUCY2FP51841 1108 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 MAP9Q49MG5 647 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 KLHL10Q6JEL2 608 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PLPPR4Q7Z2D5 763 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 RTN4RL1Q86UN2 441 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 IL17RAQ96F46 866 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 RPS6KC1Q96S38 1066 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 RBSNQ9H1K0 784 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 ETAA1Q9NY74 926 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 MAFBQ9Y5Q3 323 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 ZBTB42B2RXF5 422 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 HNRNPDLO14979 420 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 GJB5O95377 273 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 GCNT3O95395 438 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 F13A1P00488 732 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 SPATA31C1P0DKV0 1188 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 RPL17P18621 184 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 USP8P40818 1118 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 CLNS1AP54105 237 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 TPM4P67936 248 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 ADGRE1Q14246 886 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 CNKSR3Q6P9H4 555 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 DPH6Q7L8W6 267 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PACS2Q86VP3 889 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 BSNDQ8WZ55 320 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 TNFRSF25Q93038 417 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 SNTG2Q9NY99 539 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 CACNA1HO95180 2353 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PARP14Q460N5 1801 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 GPR182O15218 404 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 SSTR3P32745 418 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 GPM6BQ13491 265 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 C1QTNF12Q5T7M4 302 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PALB2Q86YC2 1186 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 ZBTB8OSQ8IWT0 167 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 TMCO5AQ8N6Q1 288 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 DAGLBQ8NCG7 672 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 FBXO22Q8NEZ5 403 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 XPNPEP1Q9NQW7 623 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PCDHA2Q9Y5H9 948 aa8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 TIMM13Q9Y5L4 95 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 TCF20Q9UGU0 1960 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-219ENST00000514096 PITPNM1O00562 1244 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 MAGEB2O15479 319 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 SFPQP23246 707 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 ABL2P42684 1182 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 ALDH7A1P49419 539 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 CAPSQ13938 189 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 EEF1DP3Q658K8 133 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 FBXL16Q8N461 479 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 MRPL44Q9H9J2 332 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 DNAJB4Q9UDY4 337 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 NFASCO94856 1347 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 SYCE3A1L190 88 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 CLIC2O15247 247 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 GRM6O15303 877 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 GLRA2P23416 452 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 TPP2P29144 1249 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 ACOT2P49753 483 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 DMP1Q13316 513 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 PRPF4BQ13523 1007 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 UVSSAQ2YD98 709 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 ZNF568Q3ZCX4 644 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 TTC30AQ86WT1 665 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 C12orf76Q8N812 135 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 CRYGNQ8WXF5 182 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 EMID1Q96A84 441 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 CXCL16Q9H2A7 254 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms