RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NXF1Q9UBU9 619 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 PRR12Q9ULL5 1215 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 FANCGO15287 622 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 RAD17O75943 681 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 PSAPP07602 524 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 CCND2P30279 289 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 TNFAIP1Q13829 316 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 PPP2R5DQ14738 602 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 RASIP1Q5U651 963 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 MIS18BP1Q6P0N0 1132 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 ENOSF1Q7L5Y1 443 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 TTC17Q96AE7 1141 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 MMTAG2Q9BU76 263 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF341Q9BYN7 854 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 FAM129AQ9BZQ8 928 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 TRAF3IP3Q9Y228 551 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 GINS2Q9Y248 185 aa8.96□□□□□ -0.97
LIMCH1-216ENST00000512820 IQANK1A0A1B0GTG1 560 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 APBA3O96018 575 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 ABCD1P33897 745 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC1A1P43005 524 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 PDIA2Q13087 525 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 MAP7D1Q3KQU3 841 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 MOXD1Q6UVY6 613 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 ZBTB33Q86T24 672 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 LDHDQ86WU2 507 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 MASTLQ96GX5 879 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 RMDN3Q96TC7 470 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 FEM1BQ9UK73 627 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 UBE4BO95155 1302 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 EIF4E1BA6NMX2 242 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 DDX3XO00571 662 aaKnown RBP eCLIP8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 GYG2O15488 501 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 OPHN1O60890 802 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 PSMA2P25787 234 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 PTENP60484 403 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 CYFIP1Q7L576 1253 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 CD302Q8IX05 232 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 KCTD17Q8N5Z5 321 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 RBM15Q96T37 977 aaKnown RBP eCLIP8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 PPP1R9AQ9ULJ8 1098 aa8.96□□□□□ -0.98
LIMCH1-216ENST00000512820 ECE2O60344 883 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 GNA15P30679 374 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SSTR3P32745 418 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ITGA8P53708 1063 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 PSMC5P62195 406 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 PRKG1Q13976 671 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 NPY5RQ15761 445 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 AP1ARQ63HQ0 302 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 HHIPL2Q6UWX4 724 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SCARA5Q6ZMJ2 495 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 MCPH1Q8NEM0 835 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 FLAD1Q8NFF5 587 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 CPA5Q8WXQ8 436 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 MAML1Q92585 1016 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 TRABDQ9H4I3 376 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 KIAA1586Q9HCI6 787 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 RAVER2Q9HCJ3 691 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SCOCQ9UIL1 159 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 TPX2Q9ULW0 747 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 MRC1P22897 1456 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 IGF2BP3O00425 579 aaKnown RBP eCLIP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 CLGNO14967 610 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 KIF1CO43896 1103 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ECM2O94769 699 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 FSBPO95073 299 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 YWHABP31946 246 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 RAD23BP54727 409 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 KRT76Q01546 638 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ANKRD20A8PQ5CZ79 823 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 LMBRD2Q68DH5 695 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 NT5DC3Q86UY8 548 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SPATA24Q86W54 205 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 MREGQ8N565 214 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 TMEM35BQ8NCS4 154 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 NUDCD1Q96RS6 583 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 CRAMP1Q96RY5 1269 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM118BQ9BPY3 351 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ADAM33Q9BZ11 813 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 AS3MTQ9HBK9 375 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 LMNAP02545 664 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ARSEP51690 589 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC8A3P57103 927 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SNRNP35Q16560 246 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SLFN12LQ6IEE8 588 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC35C1Q96A29 364 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 DNAJC19Q96DA6 116 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SPDL1Q96EA4 605 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 CFAP36Q96G28 342 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 CDHR1Q96JP9 859 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 BTBD6Q96KE9 485 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 KDM4CQ9H3R0 1056 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 SEMA4AQ9H3S1 761 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 GTPBP10A4D1E9 387 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 PI4K2BG5E9Z4 385 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 P4HA2O15460 535 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 MAP3K7O43318 606 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 CPP00450 1065 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 ASNSP08243 561 aa8.95□□□□□ -0.98
LIMCH1-216ENST00000512820 RARGP13631 454 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms