RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 AGTP01019 485 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ZKSCAN8Q15776 578 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 C1orf220Q5T0J3 134 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 INTS8Q75QN2 995 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CBWD2Q8IUF1 395 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 ARHGEF2Q92974 986 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 IDI2Q9BXS1 227 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 TRIM7Q9C029 511 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 TMEM117Q9H0C3 514 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 TAOK3Q9H2K8 898 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 TBK1Q9UHD2 729 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 PCDHA3Q9Y5H8 950 aa9.94□□□□□ -0.82
LIMCH1-215ENST00000512632 CLRN2A0PK11 232 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 SLC16A4O15374 487 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 RARGP13631 454 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 CTNNA2P26232 953 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 NFIL3Q16649 462 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 C11orf63Q6NUN7 778 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 MIER3Q7Z3K6 550 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PODNQ7Z5L7 613 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 COL23A1Q86Y22 540 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 XXYLT1Q8NBI6 393 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 SEMA4DQ92854 862 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 WDR11Q9BZH6 1224 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 CDC42EP4Q9H3Q1 356 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 FGFR1OP2Q9NVK5 253 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 HSPBP1Q9NZL4 362 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PIK3CDO00329 1044 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 HSPA6P17066 643 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PEX3P56589 373 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 ELF3P78545 371 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 CNGA2Q16280 664 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 KYNUQ16719 465 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PREPLQ4J6C6 727 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 DAB2IPQ5VWQ8 1189 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PIGWQ7Z7B1 504 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 KIRREL3Q8IZU9 778 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 GDAP1Q8TB36 358 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 TCP11X1B4DZS4 312 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 ECM2O94769 699 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 LLGL2Q6P1M3 1020 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 BTNL9Q6UXG8 535 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 SEPT14Q6ZU15 432 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 TRPM8Q7Z2W7 1104 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 HAUS6Q7Z4H7 955 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 RPS6KC1Q96S38 1066 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 KIFC3Q9BVG8 833 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 WNT8AQ9H1J5 351 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 TOPORSQ9NS56 1045 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PARP2Q9UGN5 583 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PFASO15067 1338 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 PASKQ96RG2 1323 aa9.93□□□□□ -0.82
LIMCH1-215ENST00000512632 KLRG2A4D1S0 409 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ECEL1O95672 775 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ITGB5P18084 799 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 CHKAP35790 457 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 NEDD9Q14511 834 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 RASA3Q14644 834 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 SLMAPQ14BN4 828 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 GRIPAP1Q4V328 841 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 SGO2Q562F6 1265 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 DACT2Q5SW24 774 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 NUGGCQ68CJ6 796 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 RNF207Q6ZRF8 634 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 FMNL3Q8IVF7 1028 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 HEMGNQ9BXL5 484 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 A1CFQ9NQ94 594 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 CHST7Q9NS84 486 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 AGAP1Q9UPQ3 857 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 UBOX5O94941 541 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 NF2P35240 595 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 RWDD2BP57060 319 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 FMO1Q01740 532 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 KRT17Q04695 432 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 SPDYCQ5MJ68 293 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 CNOT7Q9UIV1 285 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 TMEM120BA0PK00 339 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ASAP2O43150 1006 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ADRB2P07550 413 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 TNIP1Q15025 636 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 SLC9A9Q8IVB4 645 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 N4BP2L2Q92802 583 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ART4Q93070 314 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ACCSQ96QU6 501 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 NOD2Q9HC29 1040 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 NOCTQ9UK39 431 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 L3MBTL1Q9Y468 752 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ZHX2Q9Y6X8 837 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 KRT5P13647 590 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 EZRP15311 586 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 NPR1P16066 1061 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 SIX1Q15475 284 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 CPXCR1Q8N123 301 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 KIF2BQ8N4N8 673 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 PI4K2AQ9BTU6 479 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 BTAF1O14981 1849 aa9.92□□□□□ -0.82
LIMCH1-215ENST00000512632 ECE2O60344 883 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms