RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 AKAP7Q9P0M2 348 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 ANKIB1Q9P2G1 1089 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 KLHL3Q9UH77 587 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DAPK2Q9UIK4 370 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 NOB1Q9ULX3 412 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 PHF8Q9UPP1 1060 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 USP15Q9Y4E8 981 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 STON1Q9Y6Q2 735 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 NALCNQ8IZF0 1738 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 RPAP1Q9BWH6 1393 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 MBD5Q9P267 1494 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 A0A087WXM4 84 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CCT8L1PA6NM43 557 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZBBXA8MT70 800 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TEX46H3BTG2 121 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CHP2O43745 196 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 POLR3DP05423 398 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 CDH3P22223 829 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 JAK1P23458 1154 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CLK1P49759 484 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 RPS6KA3P51812 740 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 KPNA1P52294 538 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 ARFIP2P53365 341 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 GMFBP60983 142 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CYP4F8P98187 520 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 BNIP1Q12981 228 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CUL4AQ13619 759 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 AOC3Q16853 763 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TRMT5Q32P41 509 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 C6orf52Q5T4I8 152 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DEPDC1Q5TB30 811 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DPY19L2Q6NUT2 758 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZNF544Q6NX49 715 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PRMT9Q6P2P2 845 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CYB5D1Q6P9G0 228 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 FKBP9P1Q75LS8 142 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SV2BQ7L1I2 683 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SPAG16Q8N0X2 631 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SPERTQ8NA61 448 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TTC13Q8NBP0 860 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZFAND2BQ8WV99 257 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PIGKQ92643 395 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 HPS3Q969F9 1004 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZFYVE19Q96K21 471 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TEKT5Q96M29 485 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PLEKHA5Q9HAU0 1116 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CHMP1AQ9HD42 196 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 MLXIPLQ9NP71 852 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 UBN1Q9NPG3 1134 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ECHDC1Q9NTX5 307 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ANAPC7Q9UJX3 599 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CNPY2Q9Y2B0 182 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 USP16Q9Y5T5 823 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ADAMTS13Q76LX8 1427 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZBED4O75132 1171 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SUPT3HO75486 399 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 CLPTM1O96005 669 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 LDHCP07864 332 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 UQCRFS1P1P0C7P4 283 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 WARSP23381 471 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 MAGEA4P43358 317 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 MAGEA6P43360 314 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ATP1A2P50993 1020 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PGDP52209 483 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ASIC1P78348 528 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 KLHL30Q0D2K2 578 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SCRN1Q12765 414 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DHX34Q14147 1143 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 BEND3Q5T5X7 828 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 KRT40Q6A162 431 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 UTS2BQ765I0 119 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZNF579Q8NAF0 562 aaKnown RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 SH3TC2Q8TF17 1288 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 COG1Q8WTW3 980 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DLG3Q92796 817 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 KIFC2Q96AC6 838 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 VPS39Q96JC1 886 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ZNF285Q96NJ3 590 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 PPP1R2P1Q96PQ5 205 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 FMO2Q99518 471 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 THTPAQ9BU02 230 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 FRMD8Q9BZ67 464 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 FTOQ9C0B1 505 aaKnown RBP eCLIP3.78□□□□□ -1.8
USP53-205ENST00000509769 C6orf62Q9GZU0 229 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 TAF1DQ9H5J8 278 aaPredicted RBP3.78□□□□□ -1.8
USP53-205ENST00000509769 ZWILCHQ9H900 591 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ETNK1Q9HBU6 452 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 C6orf50Q9HD87 102 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 LMBRD1Q9NUN5 540 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 TMEM51Q9NW97 253 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DLGAP2Q9P1A6 1054 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 DMTF1Q9Y222 760 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 SNX9Q9Y5X1 595 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ANKARQ7Z5J8 1434 aa3.78□□□□□ -1.8
USP53-205ENST00000509769 ARHGEF28Q8N1W1 1705 aaKnown RBP3.78□□□□□ -1.81
USP53-205ENST00000509769 PDLIM1O00151 329 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 POLR3AO14802 1390 aaPredicted RBP3.77□□□□□ -1.81
USP53-205ENST00000509769 C21orf2O43822 256 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 DNAJC6O75061 913 aa3.77□□□□□ -1.81
USP53-205ENST00000509769 ECDO95905 644 aaPredicted RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms