RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, human

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-208	ENST00000508604	TFAP2C	Q92754	450 aa		4.29	□□□□□ -1.72
NUP54-208	ENST00000508604	ZMAT4	Q9H898	229 aa		4.29	□□□□□ -1.72
NUP54-208	ENST00000508604	DKK2	Q9UBU2	259 aa		4.29	□□□□□ -1.72
NUP54-208	ENST00000508604	TES	Q9UGI8	421 aa	Known RBP	4.29	□□□□□ -1.72
NUP54-208	ENST00000508604	KCNG1	Q9UIX4	513 aa		4.29	□□□□□ -1.72
NUP54-208	ENST00000508604	TBKBP1	A7MCY6	615 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604		E9PSI1	815 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	ELL2	O00472	640 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	PRAMEF4	O60810	478 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	ZNF362	Q5T0B9	420 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	KIF18B	Q86Y91	864 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	PMFBP1	Q8TBY8	1022 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	RSAD2	Q8WXG1	361 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	IGSF5	Q9NSI5	407 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	ATP11B	Q9Y2G3	1177 aa		4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	USP15	Q9Y4E8	981 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	COL11A2	P13942	1736 aa	Predicted RBP	4.28	□□□□□ -1.72
NUP54-208	ENST00000508604	ZNF185	O15231	689 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	CDKL5	O76039	1030 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	PFKM	P08237	780 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	LTA4H	P09960	611 aa	Known RBP	4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	ATP2A2	P16615	1042 aa	Known RBP	4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	PLA2G5	P39877	138 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	UBE3C	Q15386	1083 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	LILRB2	Q8N423	598 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	SLC44A3	Q8N4M1	653 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	LRFN3	Q9BTN0	628 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	PRDM13	Q9H4Q3	707 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.27	□□□□□ -1.73
NUP54-208	ENST00000508604	NOX1	Q9Y5S8	564 aa		4.27	□□□□□ -1.73
NUP54-208	ENST00000508604		A0A1W2PR48	441 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	SPDEF	O95238	335 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	EGR2	P11161	476 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	FDXR	P22570	491 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	PTH2R	P49190	550 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	KPNA1	P52294	538 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	MEF2A	Q02078	507 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	PPARA	Q07869	468 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	SART3	Q15020	963 aa	Known RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	PAPD7	Q5XG87	772 aa	Known RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	CREB3L3	Q68CJ9	461 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	SYT12	Q8IV01	421 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	ASB10	Q8WXI3	467 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	FDXACB1	Q9BRP7	624 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	TEX101	Q9BY14	249 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	REXO4	Q9GZR2	422 aa	Known RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	H2AFY2	Q9P0M6	372 aa	Predicted RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	MAP3K2	Q9Y2U5	619 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	POLR2A	P24928	1970 aa	Known RBP	4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	MYADML2	A6NDP7	307 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	GAST	P01350	101 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	ITGB6	P18564	788 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	LSP1	P33241	339 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	NEK4	P51957	841 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	OCRL	Q01968	901 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	BMT2	Q1RMZ1	405 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	ZBTB41	Q5SVQ8	909 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	GPR158	Q5T848	1215 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	BHLHA9	Q7RTU4	235 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	RNF169	Q8NCN4	708 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	ORAI3	Q9BRQ5	295 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	WNT8A	Q9H1J5	351 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	NUMBL	Q9Y6R0	609 aa		4.26	□□□□□ -1.73
NUP54-208	ENST00000508604	ZMYM3	Q14202	1370 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	MAST3	O60307	1309 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	RAB11FIP3	O75154	756 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	ITGA10	O75578	1167 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	F2	P00734	622 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	IGLV2-14	P01704	120 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	SDS	P20132	328 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	MPL	P40238	635 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	NFE2L2	Q16236	605 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	C19orf54	Q5BKX5	351 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	MICALCL	Q6ZW33	695 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	ZNF384	Q8TF68	577 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	CHTF18	Q8WVB6	975 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	SMG7	Q92540	1137 aa	Known RBP	4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	ZNF496	Q96IT1	587 aa	Predicted RBP	4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	PAWR	Q96IZ0	340 aa	Known RBP	4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	PHACTR3	Q96KR7	559 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	C8orf37	Q96NL8	207 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	ADAM2	Q99965	735 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	MTFR1L	Q9H019	292 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	THG1L	Q9NWX6	298 aa	Known RBP	4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	LRIT1	Q9P2V4	623 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	FRMD4B	Q9Y2L6	1034 aa		4.25	□□□□□ -1.73
NUP54-208	ENST00000508604	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	ANKS6	Q68DC2	871 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	BTNL9	Q6UXG8	535 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	ARHGEF25	Q86VW2	580 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	NXPE1	Q8N323	547 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	FAM98A	Q8NCA5	519 aa	Known RBP	4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	MDM1	Q8TC05	714 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	SNX33	Q8WV41	574 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	TBCCD1	Q9NVR7	557 aa		4.24	□□□□□ -1.73
NUP54-208	ENST00000508604	PRSS38	A1L453	326 aa		4.23	□□□□□ -1.73
NUP54-208	ENST00000508604	KPNA6	O60684	536 aa		4.23	□□□□□ -1.73
NUP54-208	ENST00000508604	RFPL3	O75679	317 aa		4.23	□□□□□ -1.73
NUP54-208	ENST00000508604	CFI	P05156	583 aa		4.23	□□□□□ -1.73

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