RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 KLHL36Q8N4N3 616 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 BVESQ8NE79 360 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 SSH3Q8TE77 659 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 TOE1Q96GM8 510 aaKnown RBP5.56□□□□□ -1.52
NUP54-206ENST00000508465 APBA2Q99767 749 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 BARX1Q9HBU1 254 aaPredicted RBP5.56□□□□□ -1.52
NUP54-206ENST00000508465 METTL5Q9NRN9 209 aaKnown RBP5.56□□□□□ -1.52
NUP54-206ENST00000508465 GNL3LQ9NVN8 582 aaKnown RBP5.56□□□□□ -1.52
NUP54-206ENST00000508465 COA3Q9Y2R0 106 aaPredicted RBP5.56□□□□□ -1.52
NUP54-206ENST00000508465 ZDHHC9Q9Y397 364 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 EMC9Q9Y3B6 208 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 TESMINQ9Y4I5 508 aa5.56□□□□□ -1.52
NUP54-206ENST00000508465 MYO1BO43795 1136 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 NAT2P11245 290 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 PRDX5P30044 214 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 ECE1P42892 770 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 LBX1P52954 281 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 KIF23Q02241 960 aaPredicted RBP5.55□□□□□ -1.52
NUP54-206ENST00000508465 TCP10Q12799 353 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 RASGRF1Q13972 1273 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 INF2Q27J81 1249 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 HS1BP3Q53T59 392 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 APOBEC3HQ6NTF7 200 aaKnown RBP5.55□□□□□ -1.52
NUP54-206ENST00000508465 KIAA1211LQ6NV74 962 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 CEP85Q6P2H3 762 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 APOBEC3FQ8IUX4 373 aaKnown RBP5.55□□□□□ -1.52
NUP54-206ENST00000508465 WDR66Q8TBY9 1149 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 TBC1D22AQ8WUA7 517 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 KLHL6Q8WZ60 621 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 TEKT1Q969V4 418 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 MBD6Q96DN6 1003 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 CLMNQ96JQ2 1002 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 TMEM39BQ9GZU3 492 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 CCDC8Q9H0W5 538 aaPredicted RBP5.55□□□□□ -1.52
NUP54-206ENST00000508465 CYP26B1Q9NR63 512 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 ZBTB40Q9NUA8 1239 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 ABCF2Q9UG63 623 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 CROTQ9UKG9 612 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 EXOC6BQ9Y2D4 811 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 PCDHGB7Q9Y5F8 929 aa5.55□□□□□ -1.52
NUP54-206ENST00000508465 PATE3B3GLJ2 98 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 HGSO14964 777 aaPredicted RBP5.54□□□□□ -1.52
NUP54-206ENST00000508465 MAP2K2P36507 400 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 GIPRP48546 466 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 MMP14P50281 582 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 MLLT6P55198 1093 aaPredicted RBP5.54□□□□□ -1.52
NUP54-206ENST00000508465 MAP2K1Q02750 393 aaPredicted RBP5.54□□□□□ -1.52
NUP54-206ENST00000508465 KRTAP1-1Q07627 177 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 MVPQ14764 893 aaKnown RBP5.54□□□□□ -1.52
NUP54-206ENST00000508465 CDC42EP5Q6NZY7 148 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 TMEM169Q96HH4 297 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 ZSWIM3Q96MP5 696 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 TMEM209Q96SK2 561 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 ZNF341Q9BYN7 854 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 IL1RAPL2Q9NP60 686 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 GINM1Q9NU53 330 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 HMG20BQ9P0W2 317 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 DENND2AQ9ULE3 1009 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 NOP58Q9Y2X3 529 aaKnown RBP5.54□□□□□ -1.52
NUP54-206ENST00000508465 X6R8D5 127 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 ZNF609O15014 1411 aa5.54□□□□□ -1.52
NUP54-206ENST00000508465 COL1A1P02452 1464 aaPredicted RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 HSPA8P11142 646 aaKnown RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 FPR2P25090 351 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 NF2P35240 595 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 MCAMP43121 646 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 CTCFP49711 727 aaPredicted RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 HDLBPQ00341 1268 aaKnown RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 MECOMQ03112 1051 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 NFATC3Q12968 1075 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 SUPT20HL1Q3ZLR7 823 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 TNNI3KQ59H18 835 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 TTC39AQ5SRH9 613 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 LDLRAD1Q5T700 205 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 E4F1Q66K89 784 aaPredicted RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 VHLLQ6RSH7 139 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 MIGA2Q7L4E1 593 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 ARMC9Q7Z3E5 817 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 DZIP1Q86YF9 867 aaKnown RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 RASAL3Q86YV0 1011 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 SPATA5Q8NB90 893 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 ZNF384Q8TF68 577 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 EAF2Q96CJ1 260 aaPredicted RBP5.53□□□□□ -1.52
NUP54-206ENST00000508465 DTLQ9NZJ0 730 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 RAI14Q9P0K7 980 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 EFR3BQ9Y2G0 817 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 FPGT-TNNI3KV9GXZ4 949 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 TRPM7Q96QT4 1865 aa5.53□□□□□ -1.52
NUP54-206ENST00000508465 A0A1B0GUL6 1792 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 UQCRFS1P1P0C7P4 283 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 SOX9P48436 509 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 ZNF143P52747 638 aaPredicted RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 FANCCQ00597 558 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 KLF10Q13118 480 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 NOGQ13253 232 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 SPDYAQ5MJ70 313 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 SPTY2D1Q68D10 685 aaPredicted RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 GTF2IRD2BQ6EKJ0 949 aa5.52□□□□□ -1.53
NUP54-206ENST00000508465 TRMT10BQ6PF06 316 aaKnown RBP5.52□□□□□ -1.53
NUP54-206ENST00000508465 GTF2IRD2Q86UP8 949 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms