RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 EFHD1Q9BUP0 239 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 TRPC7Q9HCX4 862 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 SARS2Q9NP81 518 aaKnown RBP13.95□□□□□ -0.18
PTPRF-215ENST00000496447 TMEM247A6NEH6 219 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 F5H423 210 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-215ENST00000496447 RARBP10826 455 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 CLEC10AQ8IUN9 316 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 E5RI56 91 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 KIAA0391O15091 583 aaKnown RBP13.95□□□□□ -0.18
PTPRF-215ENST00000496447 FTLP02792 175 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-215ENST00000496447 MAML1Q92585 1016 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 PFASO15067 1338 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 NTSR2O95665 410 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 CYBBP04839 570 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 NMT1P30419 496 aaKnown RBP13.95□□□□□ -0.18
PTPRF-215ENST00000496447 ADCY2Q08462 1091 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 C6orf118Q5T5N4 469 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 APPL2Q8NEU8 664 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 PRR12Q9ULL5 1215 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 SNX24Q9Y343 169 aa13.95□□□□□ -0.18
PTPRF-215ENST00000496447 SPHKAPQ2M3C7 1700 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 ARHGEF40Q8TER5 1519 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 PI4K2BG5E9Z4 385 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 COPEO14579 308 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 KRT38O76015 456 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 BCAR1P56945 870 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 SLC15A2Q16348 729 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 KIF19Q2TAC6 998 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 SLC16A10Q8TF71 515 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 DEFB129Q9H1M3 183 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 TRPM1Q7Z4N2 1603 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 GOLGA8MH3BSY2 632 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 ITPK1Q13572 414 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 PDIA5Q14554 519 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 HABP4Q5JVS0 413 aaKnown RBP13.94□□□□□ -0.18
PTPRF-215ENST00000496447 SAMD7Q7Z3H4 446 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 SZRD1Q7Z422 152 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 LRRC43Q8N309 656 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 TMEM39BQ9GZU3 492 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 DDX56Q9NY93 547 aaKnown RBP13.94□□□□□ -0.18
PTPRF-215ENST00000496447 SUN2Q9UH99 717 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 AGAP1Q9UPQ3 857 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 ZNF235Q14590 738 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 WDR72Q3MJ13 1102 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 PARP9Q8IXQ6 854 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 ANKRD13AQ8IZ07 590 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 SCAF8Q9UPN6 1271 aaKnown RBP13.94□□□□□ -0.18
PTPRF-215ENST00000496447 ANKRD65E5RJM6 399 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 MAGEB2O15479 319 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 CDKL3Q8IVW4 592 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-215ENST00000496447 FMR1NBQ8N0W7 255 aaPredicted RBP13.94□□□□□ -0.18
PTPRF-215ENST00000496447 DNAJC5Q9H3Z4 198 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 NFU1Q9UMS0 254 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 CNTNAP4Q9C0A0 1308 aa13.94□□□□□ -0.18
PTPRF-215ENST00000496447 STXBP3O00186 592 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 CFLARO15519 480 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 RPS6KA5O75582 802 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 LMNAP02545 664 aaKnown RBP13.93□□□□□ -0.18
PTPRF-215ENST00000496447 GUCY1A2P33402 732 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 C16orf86Q6ZW13 317 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 TTC8Q8TAM2 541 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 CDC42BPAQ5VT25 1732 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 NPHP3-ACAD11A0A0J9YXS1 232 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 DFFAO00273 331 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 SSTR3P32745 418 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-215ENST00000496447 EZH2Q15910 746 aaKnown RBP13.93□□□□□ -0.18
PTPRF-215ENST00000496447 PDCD7Q8N8D1 485 aaKnown RBP13.93□□□□□ -0.18
PTPRF-215ENST00000496447 NUDT12Q9BQG2 462 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 PSD3Q9NYI0 1048 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 SMARCA1P28370 1054 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 RBP5P82980 135 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 ROR1Q01973 937 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 ST13P4Q8IZP2 240 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-215ENST00000496447 ARHGAP18Q8N392 663 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 SH3TC2Q8TF17 1288 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 ULK4Q96C45 1275 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 PRDM4Q9UKN5 801 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 LRRC7Q96NW7 1537 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 PHEXP78562 749 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 FAM117BQ6P1L5 589 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 TTC7AQ9ULT0 858 aaPredicted RBP13.93□□□□□ -0.18
PTPRF-215ENST00000496447 PRAMEP78395 509 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 TMEM62Q0P6H9 643 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 TAS2R42Q7RTR8 314 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 FRMD5Q7Z6J6 570 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 SH3KBP1Q96B97 665 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 VPS11Q9H270 941 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 SNX9Q9Y5X1 595 aa13.93□□□□□ -0.18
PTPRF-215ENST00000496447 CSF1RP07333 972 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 TMEM132DQ14C87 1099 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 EMBQ6PCB8 327 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 TTC17Q96AE7 1141 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 SH2D3AQ9BRG2 576 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 DRC3Q9H069 523 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 PARVAQ9NVD7 372 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 LSM7Q9UK45 103 aaKnown RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 CDC42BPBQ9Y5S2 1711 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 PDXKO00764 312 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 SRGAP2O75044 1071 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 ALDH1A1P00352 501 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms