RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ZSCAN16Q9H4T2 348 aaPredicted RBP27.19■■□□□ 1.94
UPF3A-209ENST00000492270 KMT5AQ9NQR1 393 aa27.19■■□□□ 1.94
UPF3A-209ENST00000492270 GIT1Q9Y2X7 761 aa27.19■■□□□ 1.94
UPF3A-209ENST00000492270 K7ERI5 159 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 NDUFV1P49821 464 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 DHX8Q14562 1220 aaKnown RBP27.18■■□□□ 1.94
UPF3A-209ENST00000492270 DUSP6Q16828 381 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 COLGALT2Q8IYK4 626 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 EPSTI1Q96J88 318 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 CLIC6Q96NY7 704 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 TIPINQ9BVW5 301 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 NGRNQ9NPE2 291 aaKnown RBP27.18■■□□□ 1.94
UPF3A-209ENST00000492270 ARHGAP28Q9P2N2 729 aa27.18■■□□□ 1.94
UPF3A-209ENST00000492270 BARX2Q9UMQ3 279 aaPredicted RBP27.18■■□□□ 1.94
UPF3A-209ENST00000492270 CITO14578 2027 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 GRXCR2A6NFK2 248 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 NRP1O14786 923 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 SLC16A4O15374 487 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 MCM6Q14566 821 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 ATF7IP2Q5U623 682 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 FOXD4L5Q5VV16 416 aaPredicted RBP27.17■■□□□ 1.94
UPF3A-209ENST00000492270 VPS52Q8N1B4 723 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 SPRYD3Q8NCJ5 442 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 RASSF8Q8NHQ8 419 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 FOXD4L4Q8WXT5 416 aaPredicted RBP27.17■■□□□ 1.94
UPF3A-209ENST00000492270 AUTS2Q8WXX7 1259 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 TMEM175Q9BSA9 504 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 ZBP1Q9H171 429 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 CXCL16Q9H2A7 254 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 SNTG2Q9NY99 539 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 CLEC1BQ9P126 229 aa27.17■■□□□ 1.94
UPF3A-209ENST00000492270 PRG3Q9Y2Y8 225 aaPredicted RBP27.17■■□□□ 1.94
UPF3A-209ENST00000492270 TNFRSF10AO00220 468 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 HSP90AA1P07900 732 aaKnown RBP27.16■■□□□ 1.94
UPF3A-209ENST00000492270 CA8P35219 290 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 DSC1Q08554 894 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 SMC1AQ14683 1233 aaKnown RBP27.16■■□□□ 1.94
UPF3A-209ENST00000492270 DDX53Q86TM3 631 aaKnown RBP27.16■■□□□ 1.94
UPF3A-209ENST00000492270 GPBP1Q86WP2 473 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 RAD54LQ92698 747 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 ADPGKQ9BRR6 497 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 CCSER1Q9C0I3 900 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 C17orf75Q9HAS0 396 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 KCND2Q9NZV8 630 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 FAN1Q9Y2M0 1017 aa27.16■■□□□ 1.94
UPF3A-209ENST00000492270 SRPRBQ9Y5M8 271 aaKnown RBP27.16■■□□□ 1.94
UPF3A-209ENST00000492270 ZMYM2Q9UBW7 1377 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 C2orf71A6NGG8 1288 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 F8W810 466 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 PLS3P13797 630 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 OR1G1P47890 313 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 MSLNLQ96KJ4 702 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 REEP2Q9BRK0 252 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 TMEM134Q9H6X4 195 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 MARCH5Q9NX47 278 aa27.15■■□□□ 1.94
UPF3A-209ENST00000492270 PDCD11Q14690 1871 aaKnown RBP27.15■■□□□ 1.94
UPF3A-209ENST00000492270 CARNS1A5YM72 827 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 RECQL4O94761 1208 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 ALDH2P05091 517 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 MRPL43Q8N983 215 aaKnown RBP27.14■■□□□ 1.94
UPF3A-209ENST00000492270 RPS6KC1Q96S38 1066 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 CDCA3Q99618 268 aaPredicted RBP27.14■■□□□ 1.94
UPF3A-209ENST00000492270 ACO2Q99798 780 aaKnown RBP27.14■■□□□ 1.94
UPF3A-209ENST00000492270 TARS2Q9BW92 718 aaKnown RBP27.14■■□□□ 1.94
UPF3A-209ENST00000492270 CACNG4Q9UBN1 327 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 CD207Q9UJ71 328 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 TNFSF13BQ9Y275 285 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 GDAQ9Y2T3 454 aa27.14■■□□□ 1.94
UPF3A-209ENST00000492270 GRIK3Q13003 919 aa27.13■■□□□ 1.93
UPF3A-209ENST00000492270 SLC39A14Q15043 492 aa27.13■■□□□ 1.93
UPF3A-209ENST00000492270 PUS10Q3MIT2 529 aaKnown RBP27.13■■□□□ 1.93
UPF3A-209ENST00000492270 DCAF4L1Q3SXM0 396 aa27.13■■□□□ 1.93
UPF3A-209ENST00000492270 LLGL2Q6P1M3 1020 aa27.13■■□□□ 1.93
UPF3A-209ENST00000492270 SPIRE2Q8WWL2 714 aa27.13■■□□□ 1.93
UPF3A-209ENST00000492270 NTPCRQ9BSD7 190 aaKnown RBP27.13■■□□□ 1.93
UPF3A-209ENST00000492270 RBM19Q9Y4C8 960 aaKnown RBP27.13■■□□□ 1.93
UPF3A-209ENST00000492270 PLXNA3P51805 1871 aa27.13■■□□□ 1.93
UPF3A-209ENST00000492270 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP27.12■■□□□ 1.93
UPF3A-209ENST00000492270 PTGESO14684 152 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 MBTPS2O43462 519 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 CXCL14O95715 111 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 NASPP49321 788 aaPredicted RBP27.12■■□□□ 1.93
UPF3A-209ENST00000492270 KCNC3Q14003 757 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 CEP120Q8N960 986 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 TMEM161BQ8NDZ6 487 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 LARP4BQ92615 738 aaKnown RBP27.12■■□□□ 1.93
UPF3A-209ENST00000492270 RABGGTAQ92696 567 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 MRPL4Q9BYD3 311 aaKnown RBP27.12■■□□□ 1.93
UPF3A-209ENST00000492270 CDT1Q9H211 546 aa27.12■■□□□ 1.93
UPF3A-209ENST00000492270 CTSAP10619 480 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 PKP1Q13835 747 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 ZNF568Q3ZCX4 644 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 FAM178BQ8IXR5 827 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 PTPRHQ9HD43 1115 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 CD320Q9NPF0 282 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 TFIP11Q9UBB9 837 aaKnown RBP27.11■■□□□ 1.93
UPF3A-209ENST00000492270 ODF2LQ9ULJ1 636 aa27.11■■□□□ 1.93
UPF3A-209ENST00000492270 MAPTP10636 758 aaKnown RBP27.1■■□□□ 1.93
UPF3A-209ENST00000492270 SMTNP53814 917 aa27.1■■□□□ 1.93
UPF3A-209ENST00000492270 SMAD4Q13485 552 aaKnown RBP27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms