RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 ATAT1Q5SQI0 421 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 CDCA2Q69YH5 1023 aaPredicted RBP17.41■□□□□ 0.38
SMPD4-220ENST00000491319 HACE1Q8IYU2 909 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 GSTCDQ8NEC7 633 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 MCPH1Q8NEM0 835 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 BSNDQ8WZ55 320 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 LLPHQ9BRT6 129 aaKnown RBP17.41■□□□□ 0.38
SMPD4-220ENST00000491319 POLR3CQ9BUI4 534 aaPredicted RBP17.41■□□□□ 0.38
SMPD4-220ENST00000491319 FOXP1Q9H334 677 aaPredicted RBP17.41■□□□□ 0.38
SMPD4-220ENST00000491319 KLK14Q9P0G3 267 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 SORCS3Q9UPU3 1222 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 GIT1Q9Y2X7 761 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 CITO14578 2027 aa17.41■□□□□ 0.38
SMPD4-220ENST00000491319 A0A1B0GUA9 196 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 TTLL13PA6NNM8 815 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 BRD1O95696 1058 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 RPA1P27694 616 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 GLUD2P49448 558 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 MTMR3Q13615 1198 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 TTC38Q5R3I4 469 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 PPP4R3CPQ6ZMV5 832 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 GPR149Q86SP6 731 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 B3GALT6Q96L58 329 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 NACC1Q96RE7 527 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 RPS6KC1Q96S38 1066 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 MAN1C1Q9NR34 630 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 CACNG4Q9UBN1 327 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 ZMYM2Q9UBW7 1377 aa17.4■□□□□ 0.38
SMPD4-220ENST00000491319 TEX28O15482 410 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 MRE11P49959 708 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 HMGN5P82970 282 aaKnown RBP17.39■□□□□ 0.37
SMPD4-220ENST00000491319 GRIK3Q13003 919 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 ORC2Q13416 577 aaPredicted RBP17.39■□□□□ 0.37
SMPD4-220ENST00000491319 NBR1Q14596 966 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 PADI6Q6TGC4 694 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 CCDC149Q6ZUS6 474 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 ZBTB8OSQ8IWT0 167 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 ZDHHC14Q8IZN3 488 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 FBXO18Q8NFZ0 1043 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 ERMNQ8TAM6 284 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 RABGGTAQ92696 567 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 PRIMPOLQ96LW4 560 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 KIF2CQ99661 725 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 PRMT7Q9NVM4 692 aaPredicted RBP17.39■□□□□ 0.37
SMPD4-220ENST00000491319 PARP2Q9UGN5 583 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 LIMD1Q9UGP4 676 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 USTQ9Y2C2 406 aa17.39■□□□□ 0.37
SMPD4-220ENST00000491319 PDCD11Q14690 1871 aaKnown RBP17.38■□□□□ 0.37
SMPD4-220ENST00000491319 ARHGEF35A5YM69 484 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 EDN1P05305 212 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 ADH1AP07327 375 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 MYBP10242 640 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 DSG1Q02413 1049 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 GNL2Q13823 731 aaKnown RBP17.38■□□□□ 0.37
SMPD4-220ENST00000491319 FAM187BQ17R55 369 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 KIAA0319Q5VV43 1072 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 FUT10Q6P4F1 479 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 NOSTRINQ8IVI9 506 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 UBALD2Q8IYN6 164 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 PHOX2BQ99453 314 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 GPR62Q9BZJ7 368 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 FZD8Q9H461 694 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 PDZD7Q9H5P4 517 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 SSX2IPQ9Y2D8 614 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 USP20Q9Y2K6 914 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 CACNA1HO95180 2353 aa17.38■□□□□ 0.37
SMPD4-220ENST00000491319 NR1I2O75469 434 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 GLUD1P00367 558 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 PRKCBP05771 671 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 LIG1P18858 919 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 CYP11B2P19099 503 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 RBM25P49756 843 aaKnown RBP17.37■□□□□ 0.37
SMPD4-220ENST00000491319 ECM1Q16610 540 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 TMEM132AQ24JP5 1023 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 HAUS3Q68CZ6 603 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 FAM184AQ8NB25 1140 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 ZSCAN31Q96LW9 406 aaPredicted RBP17.37■□□□□ 0.37
SMPD4-220ENST00000491319 PAAF1Q9BRP4 392 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 KIFC3Q9BVG8 833 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 COLEC11Q9BWP8 271 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 CCDC113Q9H0I3 377 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 C2orf40Q9H1Z8 148 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 RXFP1Q9HBX9 757 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 SH2B1Q9NRF2 756 aaPredicted RBP17.37■□□□□ 0.37
SMPD4-220ENST00000491319 ADAM28Q9UKQ2 775 aa17.37■□□□□ 0.37
SMPD4-220ENST00000491319 N4BP3O15049 544 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 AVPR2P30518 371 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 CCT6AP40227 531 aaKnown RBP17.36■□□□□ 0.37
SMPD4-220ENST00000491319 TRAPPC10P48553 1259 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 FXR2P51116 673 aaKnown RBP eCLIP17.36■□□□□ 0.37
SMPD4-220ENST00000491319 PTPN5P54829 565 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 TCF15Q12870 199 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 PRPF4BQ13523 1007 aaKnown RBP17.36■□□□□ 0.37
SMPD4-220ENST00000491319 MAPK6Q16659 721 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 C8orf34Q49A92 452 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 C15orf39Q6ZRI6 1047 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 GLYCTKQ8IVS8 523 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 PLCD3Q8N3E9 789 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 C4orf32Q8N8J7 132 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 CXCL16Q9H2A7 254 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms