RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 IFNAR1P17181 557 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 RFX1P22670 979 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 PSMC5P62195 406 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 HTR4Q13639 388 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 PCBP1Q15365 356 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP39-216ENST00000490193 BMP2KLQ5H9B9 411 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 LILRA6Q6PI73 481 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 TAS1R1Q7RTX1 841 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 C1orf210Q8IVY1 113 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 KIAA2013Q8IYS2 634 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 FAM177A1Q8N128 213 aaPredicted RBP9.17□□□□□ -0.94
USP39-216ENST00000490193 SMG8Q8ND04 991 aaKnown RBP9.17□□□□□ -0.94
USP39-216ENST00000490193 PJA1Q8NG27 643 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 GPR152Q8TDT2 470 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 TBCKQ8TEA7 893 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 SLC7A3Q8WY07 619 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 KCNB2Q92953 911 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 PHKBQ93100 1093 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 GJA10Q969M2 543 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 SH2D3AQ9BRG2 576 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 NT5C3AQ9H0P0 336 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 MINDY3Q9H8M7 445 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP39-216ENST00000490193 FNIP2Q9P278 1114 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 SIT1Q9Y3P8 196 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 ZFP37Q9Y6Q3 630 aaPredicted RBP9.17□□□□□ -0.94
USP39-216ENST00000490193 EPG5Q9HCE0 2579 aa9.17□□□□□ -0.94
USP39-216ENST00000490193 ZMYM2Q9UBW7 1377 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 DOCK6Q96HP0 2047 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 DDX11L8A8MPP1 907 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 M0R2N6 131 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 C2CD2LO14523 706 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 DKC1O60832 514 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP39-216ENST00000490193 TDP2O95551 362 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 DCNP07585 359 aaKnown RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 GLULP15104 373 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 AXLP30530 894 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 RFC5P40937 340 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 EVCP57679 992 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 STARD6P59095 220 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 AKAP17AQ02040 695 aaKnown RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 PPP2R5CQ13362 524 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 ZNF528Q3MIS6 628 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 PLA2G4FQ68DD2 849 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 DCLRE1AQ6PJP8 1040 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 Q6ZUG5 572 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 MAML2Q8IZL2 1156 aaPredicted RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 SUMF1Q8NBK3 374 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 PRPF31Q8WWY3 499 aaKnown RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 PSPC1Q8WXF1 523 aaKnown RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 RIN2Q8WYP3 895 aaPredicted RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 BRF1Q92994 677 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 CCDC51Q96ER9 411 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 CNTNAP3BQ96NU0 1288 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 DDX23Q9BUQ8 820 aaKnown RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 CNTNAP3Q9BZ76 1288 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 PRKD2Q9BZL6 878 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 VPS54Q9P1Q0 977 aa9.16□□□□□ -0.94
USP39-216ENST00000490193 NAP1L2Q9ULW6 460 aaPredicted RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 PRG3Q9Y2Y8 225 aaPredicted RBP9.16□□□□□ -0.94
USP39-216ENST00000490193 ARL5CA6NH57 179 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 ASAP2O43150 1006 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 TGM5O43548 720 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 ZMYND10O75800 440 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 ITGA4P13612 1032 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 OR1G1P47890 313 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 QARSP47897 775 aaKnown RBP9.15□□□□□ -0.94
USP39-216ENST00000490193 NPEPPSP55786 919 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 FGD1P98174 961 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 CREMQ03060 361 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 LAMTOR4Q0VGL1 99 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 DAGLBQ8NCG7 672 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 TCP11Q8WWU5 503 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 SHDQ96IW2 340 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 SLC26A6Q9BXS9 759 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 OSBPL6Q9BZF3 934 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 FBXO4Q9UKT5 387 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 VAV3Q9UKW4 847 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 PCDHA4Q9UN74 947 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 IPPQ9Y573 584 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 NUMBLQ9Y6R0 609 aa9.15□□□□□ -0.94
USP39-216ENST00000490193 GPR179Q6PRD1 2367 aa9.15□□□□□ -0.95
USP39-216ENST00000490193 F8W810 466 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 EML1O00423 815 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 SPTLC1O15269 473 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 TSPAN1O60635 241 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 KINO60870 393 aaKnown RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 NR1I2O75469 434 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 ERLIN2O94905 339 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 P4HBP07237 508 aaKnown RBP9.14□□□□□ -0.95
USP39-216ENST00000490193 SRGAP2CP0DJJ0 459 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 CPA1P15085 419 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 HOXA9P31269 272 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 MLH1P40692 756 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 MAGEA9P43362 315 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 SCNN1GP51170 649 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 NLRP5P59047 1200 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 PTENP60484 403 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 PRKCQQ04759 706 aa9.14□□□□□ -0.95
USP39-216ENST00000490193 POU5F1BQ06416 359 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms