RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 N4BP1O75113 896 aaKnown RBP23.55■■□□□ 1.36
SMC4-221ENST00000489573 CSDE1O75534 798 aaKnown RBP23.55■■□□□ 1.36
SMC4-221ENST00000489573 HARSP12081 509 aaKnown RBP23.55■■□□□ 1.36
SMC4-221ENST00000489573 LBX1P52954 281 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 DLG4P78352 724 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 NOLC1Q14978 699 aaKnown RBP eCLIP23.55■■□□□ 1.364e-16■■■■■ 30.2
SMC4-221ENST00000489573 ZBTB33Q86T24 672 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 CCDC51Q96ER9 411 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 CRACR2AQ9BSW2 395 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 LSM14BQ9BX40 385 aaKnown RBP23.55■■□□□ 1.36
SMC4-221ENST00000489573 PTPRHQ9HD43 1115 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 FAM207AQ9NSI2 230 aaPredicted RBP23.55■■□□□ 1.36
SMC4-221ENST00000489573 CAPN11Q9UMQ6 739 aa23.55■■□□□ 1.36
SMC4-221ENST00000489573 A0A1W2PQJ5 194 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 TTC26A0AVF1 554 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 STX10O60499 249 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 ERLIN2O94905 339 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 CTCFP49711 727 aaPredicted RBP23.54■■□□□ 1.36
SMC4-221ENST00000489573 CCZ1BP86790 482 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 CCZ1P86791 482 aaPredicted RBP23.54■■□□□ 1.36
SMC4-221ENST00000489573 MYL7Q01449 175 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 EXOC3L4Q17RC7 722 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 ZNF568Q3ZCX4 644 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 C1orf220Q5T0J3 134 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 GBP6Q6ZN66 633 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 CCDC112Q8NEF3 446 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 NEK11Q8NG66 645 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 PARD3BQ8TEW8 1205 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 PANX2Q96RD6 677 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 OSMRQ99650 979 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 GINS2Q9Y248 185 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 LUC7L2Q9Y383 392 aaKnown RBP23.54■■□□□ 1.36
SMC4-221ENST00000489573 FRMPD3Q5JV73 1810 aa23.54■■□□□ 1.36
SMC4-221ENST00000489573 OGTO15294 1046 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 GRIN2DO15399 1336 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 TSPAN1O60635 241 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 ACOT2P49753 483 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 CRELD2Q6UXH1 353 aaPredicted RBP23.53■■□□□ 1.36
SMC4-221ENST00000489573 ARRDC4Q8NCT1 418 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 VTI1AQ96AJ9 217 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 CCDC127Q96BQ5 260 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 UNC93B1Q9H1C4 597 aa23.53■■□□□ 1.36
SMC4-221ENST00000489573 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.53■■□□□ 1.36
SMC4-221ENST00000489573 RNF225M0QZC1 329 aaPredicted RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 DARSP14868 501 aaKnown RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 KRT9P35527 623 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 PTPN11Q06124 597 aaPredicted RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 PPP3CAQ08209 521 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 ITGA7Q13683 1181 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 PSMD6Q15008 389 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 PCBP1Q15365 356 aaKnown RBP eCLIP23.52■■□□□ 1.363e-12■■■■□ 20.8
SMC4-221ENST00000489573 SLC9C1Q4G0N8 1177 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 CBWD6Q4V339 395 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 CBWD3Q5JTY5 395 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 CBWD5Q5RIA9 395 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 ZBTB41Q5SVQ8 909 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 EEF1DP3Q658K8 133 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 RSPH3Q86UC2 560 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 SERINC5Q86VE9 423 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 GLT1D1Q96MS3 346 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 CDHR5Q9HBB8 845 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 RBAKQ9NYW8 714 aaPredicted RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 GCNT4Q9P109 453 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 TRIP12Q14669 1992 aaPredicted RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 LRRIQ3A6PVS8 624 aaPredicted RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 EPHB6O15197 1021 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 P4HA2O15460 535 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 FAM189A1O60320 539 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 CAPN15O75808 1086 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 RPLP2P05387 115 aaKnown RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 HSPA8P11142 646 aaKnown RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 SKILP12757 684 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 ARF4P18085 180 aaPredicted RBP23.52■■□□□ 1.36
SMC4-221ENST00000489573 EDEM3Q9BZQ6 932 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 CDT1Q9H211 546 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 TMX1Q9H3N1 280 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 PDZD7Q9H5P4 517 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 PLCB1Q9NQ66 1216 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 ABHD10Q9NUJ1 306 aa23.52■■□□□ 1.36
SMC4-221ENST00000489573 EIF4BP23588 611 aaKnown RBP23.51■■□□□ 1.35
SMC4-221ENST00000489573 PON1P27169 355 aa23.51■■□□□ 1.35
SMC4-221ENST00000489573 GCLMP48507 274 aa23.51■■□□□ 1.35
SMC4-221ENST00000489573 CRYBB1P53674 252 aaPredicted RBP23.51■■□□□ 1.35
SMC4-221ENST00000489573 ZBED6P86452 979 aa23.51■■□□□ 1.35
SMC4-221ENST00000489573 ZNF397Q8NF99 534 aaPredicted RBP23.51■■□□□ 1.35
SMC4-221ENST00000489573 CPB2Q96IY4 423 aa23.51■■□□□ 1.35
SMC4-221ENST00000489573 AGPAT5Q9NUQ2 364 aa23.51■■□□□ 1.35
SMC4-221ENST00000489573 ESPNB1AK53 854 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 M0QZ92 97 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 PMM2O15305 246 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 MCF2P10911 925 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 SLC9A1P19634 815 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 FGFR4P22455 802 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 MSNP26038 577 aaKnown RBP23.5■■□□□ 1.35
SMC4-221ENST00000489573 GTF2H1P32780 548 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 MXI1P50539 228 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 MRPS6P82932 125 aaKnown RBP23.5■■□□□ 1.35
SMC4-221ENST00000489573 CETN1Q12798 172 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 SNX17Q15036 470 aa23.5■■□□□ 1.35
SMC4-221ENST00000489573 CATSPER4Q7RTX7 472 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms