RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 K7ERI5 159 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 SLC26A4O43511 780 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 F13A1P00488 732 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 DSC1Q08554 894 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 ATF7IP2Q5U623 682 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 COLGALT2Q8IYK4 626 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 CEP120Q8N960 986 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 TMEM161BQ8NDZ6 487 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 ACO2Q99798 780 aaKnown RBP15.31■□□□□ 0.04
SYNE1-226ENST00000488376 PANK2Q9BZ23 570 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 ENTPD7Q9NQZ7 604 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 MARCH5Q9NX47 278 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 DAXXQ9UER7 740 aaPredicted RBP15.31■□□□□ 0.04
SYNE1-226ENST00000488376 PRG3Q9Y2Y8 225 aaPredicted RBP15.31■□□□□ 0.04
SYNE1-226ENST00000488376 PHLPP2Q6ZVD8 1323 aa15.31■□□□□ 0.04
SYNE1-226ENST00000488376 ABLIM1O14639 778 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 PTGESO14684 152 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 NRP1O14786 923 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 RECQL4O94761 1208 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 MAPTP10636 758 aaKnown RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 KRT17Q04695 432 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 ADAM15Q13444 863 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 GIT2Q14161 759 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 LEXMQ3ZCV2 418 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 ZBTB33Q86T24 672 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 VPS52Q8N1B4 723 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 KCTD17Q8N5Z5 321 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 KRI1Q8N9T8 703 aaKnown RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 LARP4BQ92615 738 aaKnown RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 ZBTB45Q96K62 511 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 PAAF1Q9BRP4 392 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 NTPCRQ9BSD7 190 aaKnown RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 TIPINQ9BVW5 301 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 CDT1Q9H211 546 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 TMEM134Q9H6X4 195 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 TLE6Q9H808 572 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 PTPRHQ9HD43 1115 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 UBN1Q9NPG3 1134 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 CLEC1BQ9P126 229 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 BARX2Q9UMQ3 279 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 GDAQ9Y2T3 454 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 GIT1Q9Y2X7 761 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 ZDHHC9Q9Y397 364 aa15.3■□□□□ 0.04
SYNE1-226ENST00000488376 MORC2Q9Y6X9 1032 aaPredicted RBP15.3■□□□□ 0.04
SYNE1-226ENST00000488376 SPTLC2O15270 562 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 MEFVO15553 781 aaPredicted RBP15.29■□□□□ 0.04
SYNE1-226ENST00000488376 IL9P15248 144 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 IGFBP6P24592 240 aaPredicted RBP15.29■□□□□ 0.04
SYNE1-226ENST00000488376 DDIT3P35638 169 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 OSTNP61366 133 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 STK38Q15208 465 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 DUSP6Q16828 381 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 AAK1Q2M2I8 961 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 TAS1R1Q7RTX1 841 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 TMC7Q7Z402 723 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 DDX53Q86TM3 631 aaKnown RBP15.29■□□□□ 0.04
SYNE1-226ENST00000488376 EFHBQ8N7U6 833 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 SPIRE2Q8WWL2 714 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 TMEM169Q96HH4 297 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 FAM193BQ96PV7 902 aaPredicted RBP15.29■□□□□ 0.04
SYNE1-226ENST00000488376 FIZ1Q96SL8 496 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 ZBP1Q9H171 429 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 KCND2Q9NZV8 630 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 KANSL3Q9P2N6 904 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 PUF60Q9UHX1 559 aaKnown RBP15.29■□□□□ 0.04
SYNE1-226ENST00000488376 TNFSF13BQ9Y275 285 aa15.29■□□□□ 0.04
SYNE1-226ENST00000488376 C2orf71A6NGG8 1288 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 PROZP22891 400 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 OR1G1P47890 313 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 ZNF131P52739 623 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 NCKAP1LP55160 1127 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 DNM1Q05193 864 aaKnown RBP15.28■□□□□ 0.04
SYNE1-226ENST00000488376 NAB2Q15742 525 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 SEZ6Q53EL9 994 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 PTCRAQ6ISU1 281 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-226ENST00000488376 LLGL2Q6P1M3 1020 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 DYMQ7RTS9 669 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 RSPH1Q8WYR4 309 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 MSLNLQ96KJ4 702 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 B3GALT6Q96L58 329 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 UHRF1Q96T88 793 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-226ENST00000488376 TMEM175Q9BSA9 504 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 MRPL4Q9BYD3 311 aaKnown RBP15.28■□□□□ 0.04
SYNE1-226ENST00000488376 HAPLN2Q9GZV7 340 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 IKZF4Q9H2S9 585 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 C17orf75Q9HAS0 396 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 ODF2LQ9ULJ1 636 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 FAN1Q9Y2M0 1017 aa15.28■□□□□ 0.04
SYNE1-226ENST00000488376 RBM19Q9Y4C8 960 aaKnown RBP15.28■□□□□ 0.04
SYNE1-226ENST00000488376 MYH15Q9Y2K3 1946 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 GRXCR2A6NFK2 248 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 MYMKA6NI61 221 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 CXCL14O95715 111 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 EFEMP2O95967 443 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 ALDH2P05091 517 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 HARSP12081 509 aaKnown RBP15.27■□□□□ 0.04
SYNE1-226ENST00000488376 NMT1P30419 496 aaKnown RBP15.27■□□□□ 0.04
SYNE1-226ENST00000488376 CA8P35219 290 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 NDUFV1P49821 464 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 GRIK3Q13003 919 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms