RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ASAP3Q8TDY4 903 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 ADAMTS19Q8TE59 1207 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 TMEM40Q8WWA1 233 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 MYLIPQ8WY64 445 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 RSPH1Q8WYR4 309 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 DHX58Q96C10 678 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CPB2Q96IY4 423 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 EPSTI1Q96J88 318 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 PRIMPOLQ96LW4 560 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CLIC6Q96NY7 704 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 USB1Q9BQ65 265 aaKnown RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 CCDC94Q9BW85 323 aaPredicted RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 MRPL4Q9BYD3 311 aaKnown RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 CCSER1Q9C0I3 900 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 TMEM117Q9H0C3 514 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 ELAC1Q9H777 363 aaKnown RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 PARVGQ9HBI0 331 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 AGPAT5Q9NUQ2 364 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 FAM105AQ9NUU6 356 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 KANSL3Q9P2N6 904 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 HOOK1Q9UJC3 728 aaKnown RBP8.84□□□□□ -0.99
USP40-216ENST00000485943 ODF2LQ9ULJ1 636 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 EXOC7Q9UPT5 735 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 PCDHB3Q9Y5E6 796 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 SIP14410 1827 aa8.84□□□□□ -0.99
USP40-216ENST00000485943 CNTNAP2Q9UHC6 1331 aa8.83□□□□□ -1
USP40-216ENST00000485943 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.83□□□□□ -1
USP40-216ENST00000485943 SFI1A8K8P3 1242 aa8.83□□□□□ -1
USP40-216ENST00000485943 SLC16A4O15374 487 aa8.83□□□□□ -1
USP40-216ENST00000485943 ZC3H11AO75152 810 aaKnown RBP eCLIP8.83□□□□□ -1
USP40-216ENST00000485943 STBD1O95210 358 aa8.83□□□□□ -1
USP40-216ENST00000485943 PLS3P13797 630 aa8.83□□□□□ -1
USP40-216ENST00000485943 SCP2P22307 547 aa8.83□□□□□ -1
USP40-216ENST00000485943 DDIT3P35638 169 aa8.83□□□□□ -1
USP40-216ENST00000485943 PPM1AP35813 382 aa8.83□□□□□ -1
USP40-216ENST00000485943 ARL2P36404 184 aa8.83□□□□□ -1
USP40-216ENST00000485943 NASPP49321 788 aaPredicted RBP8.83□□□□□ -1
USP40-216ENST00000485943 LIG4P49917 911 aa8.83□□□□□ -1
USP40-216ENST00000485943 ASIC1P78348 528 aa8.83□□□□□ -1
USP40-216ENST00000485943 POU5F1BQ06416 359 aa8.83□□□□□ -1
USP40-216ENST00000485943 GRB10Q13322 594 aa8.83□□□□□ -1
USP40-216ENST00000485943 GPM6BQ13491 265 aa8.83□□□□□ -1
USP40-216ENST00000485943 DCAF4L1Q3SXM0 396 aa8.83□□□□□ -1
USP40-216ENST00000485943 ZNF568Q3ZCX4 644 aa8.83□□□□□ -1
USP40-216ENST00000485943 L1TD1Q5T7N2 865 aaKnown RBP8.83□□□□□ -1
USP40-216ENST00000485943 SLC27A1Q6PCB7 646 aa8.83□□□□□ -1
USP40-216ENST00000485943 THSD4Q6ZMP0 1018 aa8.83□□□□□ -1
USP40-216ENST00000485943 ECHDC2Q86YB7 292 aa8.83□□□□□ -1
USP40-216ENST00000485943 HELQQ8TDG4 1101 aa8.83□□□□□ -1
USP40-216ENST00000485943 GLMNQ92990 594 aa8.83□□□□□ -1
USP40-216ENST00000485943 RUSC1Q9BVN2 902 aa8.83□□□□□ -1
USP40-216ENST00000485943 CUEDC2Q9H467 287 aa8.83□□□□□ -1
USP40-216ENST00000485943 MRPL44Q9H9J2 332 aaKnown RBP8.83□□□□□ -1
USP40-216ENST00000485943 RSAD1Q9HA92 442 aa8.83□□□□□ -1
USP40-216ENST00000485943 XPNPEP1Q9NQW7 623 aa8.83□□□□□ -1
USP40-216ENST00000485943 TOPORSQ9NS56 1045 aaPredicted RBP8.83□□□□□ -1
USP40-216ENST00000485943 ANKFY1Q9P2R3 1169 aa8.83□□□□□ -1
USP40-216ENST00000485943 FBXO2Q9UK22 296 aaPredicted RBP8.83□□□□□ -1
USP40-216ENST00000485943 YBX2Q9Y2T7 364 aaKnown RBP8.83□□□□□ -1
USP40-216ENST00000485943 PCDHB2Q9Y5E7 798 aa8.83□□□□□ -1
USP40-216ENST00000485943 NLRC5Q86WI3 1866 aa8.83□□□□□ -1
USP40-216ENST00000485943 TTC3P53804 2025 aa8.82□□□□□ -1
USP40-216ENST00000485943 A0A0U1RQF3 1178 aa8.82□□□□□ -1
USP40-216ENST00000485943 LINC01553A4QN01 128 aa8.82□□□□□ -1
USP40-216ENST00000485943 HNRNPDLO14979 420 aaKnown RBP8.82□□□□□ -1
USP40-216ENST00000485943 POLR2DO15514 142 aaKnown RBP8.82□□□□□ -1
USP40-216ENST00000485943 DGKIO75912 1065 aa8.82□□□□□ -1
USP40-216ENST00000485943 GCNT3O95395 438 aa8.82□□□□□ -1
USP40-216ENST00000485943 BRD1O95696 1058 aa8.82□□□□□ -1
USP40-216ENST00000485943 SRGAP2BP0DMP2 458 aa8.82□□□□□ -1
USP40-216ENST00000485943 FGFR1P11362 822 aa8.82□□□□□ -1
USP40-216ENST00000485943 GAP43P17677 238 aa8.82□□□□□ -1
USP40-216ENST00000485943 GUCY2CP25092 1073 aa8.82□□□□□ -1
USP40-216ENST00000485943 TAP1Q03518 808 aa8.82□□□□□ -1
USP40-216ENST00000485943 GPNMBQ14956 572 aa8.82□□□□□ -1
USP40-216ENST00000485943 PTPAQ15257 358 aa8.82□□□□□ -1
USP40-216ENST00000485943 CCDC85BQ15834 202 aaPredicted RBP8.82□□□□□ -1
USP40-216ENST00000485943 IL17AQ16552 155 aa8.82□□□□□ -1
USP40-216ENST00000485943 ECM1Q16610 540 aa8.82□□□□□ -1
USP40-216ENST00000485943 TMEM119Q4V9L6 283 aa8.82□□□□□ -1
USP40-216ENST00000485943 HERC4Q5GLZ8 1057 aaPredicted RBP8.82□□□□□ -1
USP40-216ENST00000485943 HYIQ5T013 277 aa8.82□□□□□ -1
USP40-216ENST00000485943 ATF7IP2Q5U623 682 aa8.82□□□□□ -1
USP40-216ENST00000485943 TMEM192Q8IY95 271 aa8.82□□□□□ -1
USP40-216ENST00000485943 LINC01465Q8N7H1 131 aa8.82□□□□□ -1
USP40-216ENST00000485943 MAFAQ8NHW3 353 aaPredicted RBP8.82□□□□□ -1
USP40-216ENST00000485943 CCDC97Q96F63 343 aaPredicted RBP8.82□□□□□ -1
USP40-216ENST00000485943 TMEM169Q96HH4 297 aa8.82□□□□□ -1
USP40-216ENST00000485943 ZNF558Q96NG5 402 aa8.82□□□□□ -1
USP40-216ENST00000485943 CDX2Q99626 313 aaPredicted RBP8.82□□□□□ -1
USP40-216ENST00000485943 NFKBIZQ9BYH8 718 aa8.82□□□□□ -1
USP40-216ENST00000485943 TMX1Q9H3N1 280 aa8.82□□□□□ -1
USP40-216ENST00000485943 MAGEF1Q9HAY2 307 aa8.82□□□□□ -1
USP40-216ENST00000485943 IFT122Q9HBG6 1241 aa8.82□□□□□ -1
USP40-216ENST00000485943 POLD4Q9HCU8 107 aa8.82□□□□□ -1
USP40-216ENST00000485943 ENTPD7Q9NQZ7 604 aa8.82□□□□□ -1
USP40-216ENST00000485943 LCHNA4D1U4 455 aa8.81□□□□□ -1
USP40-216ENST00000485943 C9IYK1 514 aa8.81□□□□□ -1
USP40-216ENST00000485943 GOLGA6L22H0YM25 854 aa8.81□□□□□ -1
USP40-216ENST00000485943 ACKR2O00590 384 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms