RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 ZNF174Q15697 407 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 MAPK6Q16659 721 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 POTEGQ6S5H5 508 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 PADI6Q6TGC4 694 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 CABP7Q86V35 215 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 PLCD3Q8N3E9 789 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 KCTD17Q8N5Z5 321 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 IGSF22Q8N9C0 903 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 KIFAP3Q92845 792 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 RPS6KC1Q96S38 1066 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 ADPGKQ9BRR6 497 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 COLEC11Q9BWP8 271 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 NXF3Q9H4D5 531 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 POMKQ9H5K3 350 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 MARCH5Q9NX47 278 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 PLXNA3P51805 1871 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 KMT2EQ8IZD2 1858 aa13.42□□□□□ -0.26
SQSTM1-207ENST00000481335 MYH11P35749 1972 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 TMEM221A6NGB7 291 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 M0R296 226 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 CNPP09543 421 aaKnown RBP13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 EPCAMP16422 314 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 KLRC2P26717 231 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 HOXD11P31277 338 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 OR1G1P47890 313 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 GLUD2P49448 558 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 SCNN1GP51170 649 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 EFNA5P52803 228 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 DSG1Q02413 1049 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 APBB1IPQ7Z5R6 666 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 UBALD2Q8IYN6 164 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 ZDHHC14Q8IZN3 488 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 C4orf32Q8N8J7 132 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 CMASQ8NFW8 434 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 HDAC7Q8WUI4 952 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 AUTS2Q8WXX7 1259 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 IFT74Q96LB3 600 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 FBXL18Q96ME1 805 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 ZFP42Q96MM3 310 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 KLHL5Q96PQ7 755 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 RXFP1Q9HBX9 757 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 GPRC5CQ9NQ84 441 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 LRWD1Q9UFC0 647 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 HES2Q9Y543 173 aa13.41□□□□□ -0.26
SQSTM1-207ENST00000481335 TRIP11Q15643 1979 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 ACKR2O00590 384 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 B4GALT5O43286 388 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 PAPLNO95428 1278 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 NPTXRO95502 500 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 CCT6AP40227 531 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 MCM2P49736 904 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 PRPF4BQ13523 1007 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 MTMR3Q13615 1198 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 DCAF4L1Q3SXM0 396 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 RILPL1Q5EBL4 403 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 RARS2Q5T160 578 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 GPR149Q86SP6 731 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 SUGP1Q8IWZ8 645 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 TDRD5Q8NAT2 981 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 GSTCDQ8NEC7 633 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 DEPTORQ8TB45 409 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 CCDC113Q9H0I3 377 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 RNF39Q9H2S5 420 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 C17orf75Q9HAS0 396 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 UPF2Q9HAU5 1272 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 CHST7Q9NS84 486 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 FNIP2Q9P278 1114 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 SORCS3Q9UPU3 1222 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 PRG3Q9Y2Y8 225 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 CITO14578 2027 aa13.4□□□□□ -0.26
SQSTM1-207ENST00000481335 SF3B1O75533 1304 aaKnown RBP eCLIP13.39□□□□□ -0.278e-6■■□□□ 12.1
SQSTM1-207ENST00000481335 SPDYE4A6NLX3 237 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 GLUD1P00367 558 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 PRKCBP05771 671 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 NUBP1P53384 320 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 PTGDRQ13258 359 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 TUSC3Q13454 348 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 USP41Q3LFD5 358 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 KIAA0319Q5VV43 1072 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 KRT79Q5XKE5 535 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 FUT10Q6P4F1 479 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 CCDC149Q6ZUS6 474 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 MAEAQ7L5Y9 396 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 ZBTB33Q86T24 672 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 SNX29Q8TEQ0 813 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 PBXIP1Q96AQ6 731 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 ACSF2Q96CM8 615 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 ASIC4Q96FT7 647 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 TIPINQ9BVW5 301 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 APOL6Q9BWW8 343 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 APOL5Q9BWW9 433 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 BHMT2Q9H2M3 363 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 PLEKHA4Q9H4M7 779 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 PDZD7Q9H5P4 517 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 MIOSQ9NXC5 875 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 PARP2Q9UGN5 583 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 KCNG1Q9UIX4 513 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 ADAM28Q9UKQ2 775 aa13.39□□□□□ -0.27
SQSTM1-207ENST00000481335 C2CD4DB7Z1M9 353 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms