RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 ATP4AP20648 1035 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 FCARP24071 287 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 GPC3P51654 580 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 ITGB3BPQ13352 177 aaPredicted RBP13.49□□□□□ -0.25
USP11-208ENST00000480104 FAM160B1Q5W0V3 765 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 ZC3H10Q96K80 434 aaKnown RBP13.49□□□□□ -0.25
USP11-208ENST00000480104 ZNF334Q9HCZ1 680 aaPredicted RBP13.49□□□□□ -0.25
USP11-208ENST00000480104 CHST12Q9NRB3 414 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 KCNH7Q9NS40 1196 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 CHST7Q9NS84 486 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 GDE1Q9NZC3 331 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 FNIP2Q9P278 1114 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 MRPS23Q9Y3D9 190 aaKnown RBP13.49□□□□□ -0.25
USP11-208ENST00000480104 URB1O60287 2271 aaKnown RBP13.49□□□□□ -0.25
USP11-208ENST00000480104 PCNX2A6NKB5 2137 aa13.49□□□□□ -0.25
USP11-208ENST00000480104 BCLAF3A2AJT9 711 aaKnown RBP13.48□□□□□ -0.25
USP11-208ENST00000480104 J3QKU1 62 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 MAFGO15525 162 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 EXTL3O43909 919 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 POMCP01189 267 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 HOXA9P31269 272 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 OR1G1P47890 313 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 EFCAB12Q6NXP0 572 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 AGMOQ6ZNB7 445 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 TRMT1LQ7Z2T5 733 aaKnown RBP13.48□□□□□ -0.25
USP11-208ENST00000480104 MAP4K3Q8IVH8 894 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 PI4K2BQ8TCG2 481 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 NLRP7Q8WX94 980 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 IRF7Q92985 503 aa13.48□□□□□ -0.25
USP11-208ENST00000480104 TRMT61BQ9BVS5 477 aaKnown RBP13.48□□□□□ -0.25
USP11-208ENST00000480104 PIN4Q9Y237 131 aaKnown RBP13.48□□□□□ -0.25
USP11-208ENST00000480104 ATMQ13315 3056 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 TK2O00142 265 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 NRG2O14511 850 aaPredicted RBP13.47□□□□□ -0.25
USP11-208ENST00000480104 ZNF623O75123 536 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 AKAP3O75969 853 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 CEBPBP17676 345 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 GDI1P31150 447 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 RAB27AP51159 221 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 SLC5A9Q2M3M2 681 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 IFIT1BQ5T764 474 aaKnown RBP13.47□□□□□ -0.25
USP11-208ENST00000480104 ABHD15Q6UXT9 468 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 CKAP2LQ8IYA6 745 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 MDM1Q8TC05 714 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 DUSP15Q9H1R2 295 aaPredicted RBP13.47□□□□□ -0.25
USP11-208ENST00000480104 SLC32A1Q9H598 525 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 RSAD1Q9HA92 442 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 TRPV5Q9NQA5 729 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 ZNF302Q9NR11 478 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 DNMT3BQ9UBC3 853 aaKnown RBP13.47□□□□□ -0.25
USP11-208ENST00000480104 NOTCH4Q99466 2003 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 WDR81Q562E7 1941 aa13.47□□□□□ -0.25
USP11-208ENST00000480104 H0Y626 953 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 DDX39AO00148 427 aaKnown RBP13.46□□□□□ -0.25
USP11-208ENST00000480104 TRIM16O95361 564 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 TMOD1P28289 359 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 ELF2Q15723 593 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 PRSS55Q6UWB4 352 aaPredicted RBP13.46□□□□□ -0.25
USP11-208ENST00000480104 COLGALT2Q8IYK4 626 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 ZNF710Q8N1W2 664 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 ZNF843Q8N446 348 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 SLC7A14Q8TBB6 771 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 PGBD4Q96DM1 585 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 GPR62Q9BZJ7 368 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 ZBTB40Q9NUA8 1239 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 KANSL3Q9P2N6 904 aa13.46□□□□□ -0.25
USP11-208ENST00000480104 CCDC163A0A0D9SF12 145 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 A0A0D9SFI3 127 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 MAGEB2O15479 319 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 POU2F2P09086 479 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 CREMQ03060 361 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 GRM4Q14833 912 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 UBE2SQ16763 222 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 USP41Q3LFD5 358 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 SWSAP1Q6NVH7 229 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 RAB44Q7Z6P3 723 aaPredicted RBP13.45□□□□□ -0.26
USP11-208ENST00000480104 ZNF589Q86UQ0 364 aaPredicted RBP13.45□□□□□ -0.26
USP11-208ENST00000480104 FAM227BQ96M60 508 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 UBAC1Q9BSL1 405 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 ZFP14Q9HCL3 533 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 HELLSQ9NRZ9 838 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 ZSWIM5Q9P217 1185 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 PCDHB2Q9Y5E7 798 aa13.45□□□□□ -0.26
USP11-208ENST00000480104 NOTCH2Q04721 2471 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 PATE3B3GLJ2 98 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 KHNYNO15037 678 aaKnown RBP13.44□□□□□ -0.26
USP11-208ENST00000480104 ATXN7O15265 892 aaPredicted RBP13.44□□□□□ -0.26
USP11-208ENST00000480104 SFPQP23246 707 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP11-208ENST00000480104 KIF5BP33176 963 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 SOX9P48436 509 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 NT5C2P49902 561 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 FAM78AQ5JUQ0 283 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 DGKKQ5KSL6 1271 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 FUT10Q6P4F1 479 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 PKN3Q6P5Z2 889 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 TXNDC11Q6PKC3 985 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 VITQ6UXI7 678 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 GPR65Q8IYL9 337 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 MXRA8Q9BRK3 442 aa13.44□□□□□ -0.26
USP11-208ENST00000480104 GCOM2Q9BZD3 368 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms