RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PARP6Q2NL67 630 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 GRIPAP1Q4V328 841 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CATSPER3Q86XQ3 398 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 KIAA0825Q8IV33 1275 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 RUSC1Q9BVN2 902 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 COL5A2P05997 1499 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 NPTXRO95502 500 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CNGA1P29973 690 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 SGO2Q562F6 1265 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 CYFIP1Q7L576 1253 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 RIOX1Q9H6W3 641 aa20.09■□□□□ 0.81
CCDC88B-207ENST00000479965 SSR1P43307 286 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 INTS5Q6P9B9 1019 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 NSMFQ6X4W1 530 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 DTX3LQ8TDB6 740 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 BHMT2Q9H2M3 363 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 DNAJC18Q9H819 358 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 PSTPIP2Q9H939 334 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 NMRK1Q9NWW6 199 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 SCOCQ9UIL1 159 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 USH1CQ9Y6N9 552 aa20.08■□□□□ 0.81
CCDC88B-207ENST00000479965 CHRNB2P17787 502 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 FMO5P49326 533 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 COG2Q14746 738 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 ZC2HC1CQ53FD0 456 aaPredicted RBP20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 TTBK2Q6IQ55 1244 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 PPP1R21Q6ZMI0 780 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 CAPN12Q6ZSI9 719 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 NEDD1Q8NHV4 660 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 RREB1Q92766 1687 aa20.08■□□□□ 0.8
CCDC88B-207ENST00000479965 ATP5HO75947 161 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 ITGA8P53708 1063 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 RBBP8NLQ8NC74 664 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 GRAMD1AQ96CP6 724 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 ADCY8P40145 1251 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 ERFP50548 548 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 PHC3Q8NDX5 983 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 AGPAT1Q99943 283 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 FAM118BQ9BPY3 351 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 INTS2Q9H0H0 1204 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 ACADSP16219 412 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 NMT1P30419 496 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 PSMC2P35998 433 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 RANBP1P43487 201 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 GCLCP48506 637 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 WDR4P57081 412 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 KHDC1Q4VXA5 237 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 TAF1BQ53T94 588 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 PRR16Q569H4 304 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 RFWD3Q6PCD5 774 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 SLC7A6OSQ96CW6 309 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 FGD4Q96M96 766 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 WDR35Q9P2L0 1181 aa20.07■□□□□ 0.8
CCDC88B-207ENST00000479965 E7ENQ6 273 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 PYGLP06737 847 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 RPS8P62241 208 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 PDCD2Q16342 344 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 HP1BP3Q5SSJ5 553 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 FAM196BA6NMK8 535 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 ALAS1P13196 640 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 RASSF2P50749 326 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 GPC5P78333 572 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 CCDC15Q0P6D6 951 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 LBRQ14739 615 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 RCN1Q15293 331 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 HYIQ5T013 277 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 RPUSD2Q8IZ73 545 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 NINJ2Q9NZG7 142 aa20.06■□□□□ 0.8
CCDC88B-207ENST00000479965 FAM47DPA6NHR8 397 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 PPP1R11O60927 126 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 T-ENOLP0DO92 83 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ACVR2BQ13705 512 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ADGRF4Q8IZF3 695 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 C4orf33Q8N1A6 199 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ANKRD35Q8N283 1001 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 B4GALNT2Q8NHY0 566 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 KIFAP3Q92845 792 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 EPAS1Q99814 870 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 GPR88Q9GZN0 384 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 UBE2TQ9NPD8 197 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ACP6Q9NPH0 428 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 STOML1Q9UBI4 398 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 APEX2Q9UBZ4 518 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ANAPC5Q9UJX4 755 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 GPR75-ASB3A0A0A6YYF3 556 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 POC1B-GALNT4F8VUJ3 575 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ATP9AO75110 1047 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 CDH16O75309 829 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 KCNA3P22001 575 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 SNX30Q5VWJ9 437 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 MXD3Q9BW11 206 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 CHST7Q9NS84 486 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 ASB3Q9Y575 518 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 TAF1P21675 1872 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 DCTN3O75935 186 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 YARSP54577 528 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 RFX8Q6ZV50 586 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 SMIM5Q71RC9 77 aa20.05■□□□□ 0.8
CCDC88B-207ENST00000479965 SLC51AQ86UW1 340 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms