RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 FZD8Q9H461 694 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 TSHZ2Q9NRE2 1034 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 PRMT7Q9NVM4 692 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 C2CD4DB7Z1M9 353 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 CYP11B2P19099 503 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 HOXD11P31277 338 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 MTHFRP42898 656 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 FAM187BQ17R55 369 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 HAUS3Q68CZ6 603 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 BMP8AQ7Z5Y6 402 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 PPFIBP1Q86W92 1011 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 MFSD14AQ96MC6 490 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 FBXL18Q96ME1 805 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 RIPOR3Q96MK2 946 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 CCDC113Q9H0I3 377 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 PDZD7Q9H5P4 517 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 MRPL17Q9NRX2 175 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 NR2E1Q9Y466 385 aa20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 MTCL1Q9Y4B5 1905 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-206ENST00000473405 ARHGEF35A5YM69 484 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 C2CD2LO14523 706 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 EDN1P05305 212 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 URODP06132 367 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 MUTP22033 750 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 SIGLEC14Q08ET2 396 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 CABP7Q86V35 215 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 ZBTB8OSQ8IWT0 167 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 HACE1Q8IYU2 909 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 ASIC4Q96FT7 647 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 RPS6KC1Q96S38 1066 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 EMILIN2Q9BXX0 1053 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 SFXN1Q9H9B4 322 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 KLK14Q9P0G3 267 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 NOL7Q9UMY1 257 aaKnown RBP20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 TRIP11Q15643 1979 aa20.79■□□□□ 0.92
CCDC88B-206ENST00000473405 KLRC2P26717 231 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 CCT6AP40227 531 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 GRIK3Q13003 919 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 KIAA0319Q5VV43 1072 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 TMC5Q6UXY8 1006 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 IGSF22Q8N9C0 903 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 C2orf40Q9H1Z8 148 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 LRWD1Q9UFC0 647 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 USP20Q9Y2K6 914 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 PCDHB6Q9Y5E3 794 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 CACNA1HO95180 2353 aa20.78■□□□□ 0.92
CCDC88B-206ENST00000473405 VWA8A3KMH1 1905 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 TEX28O15482 410 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 NAMPTP43490 491 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 GLUD2P49448 558 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 PTGDRQ13258 359 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 PBXIP1Q96AQ6 731 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 KIFC3Q9BVG8 833 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 KCNH6Q9H252 994 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 BHMT2Q9H2M3 363 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 CHST7Q9NS84 486 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 CACNG4Q9UBN1 327 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 PARP2Q9UGN5 583 aa20.77■□□□□ 0.92
CCDC88B-206ENST00000473405 PRKCBP05771 671 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 DSG1Q02413 1049 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 PRPF4BQ13523 1007 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 RABEP1Q15276 862 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 MAPK6Q16659 721 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 ATAT1Q5SQI0 421 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 GPR149Q86SP6 731 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 B3GALT6Q96L58 329 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 GPR62Q9BZJ7 368 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 RXFP1Q9HBX9 757 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 POLD4Q9HCU8 107 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 DDX19AQ9NUU7 478 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 KIAA1024Q9UPX6 916 aa20.76■□□□□ 0.91
CCDC88B-206ENST00000473405 PP2D1A8MPX8 630 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 ACKR2O00590 384 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 PTGESO14684 152 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 N4BP3O15049 544 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 NR1I2O75469 434 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 PDIA5Q14554 519 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 IL17AQ16552 155 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 FUT10Q6P4F1 479 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 ZBTB33Q86T24 672 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 TDRD5Q8NAT2 981 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 KREMEN2Q8NCW0 462 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 DEPTORQ8TB45 409 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 SNX29Q8TEQ0 813 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 RABGGTAQ92696 567 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 PAAF1Q9BRP4 392 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 CXCL16Q9H2A7 254 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 MAN1C1Q9NR34 630 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 ADAM28Q9UKQ2 775 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 USTQ9Y2C2 406 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 SSX2IPQ9Y2D8 614 aa20.75■□□□□ 0.91
CCDC88B-206ENST00000473405 MYH11P35749 1972 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 RECQL4O94761 1208 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 CD2BP2O95400 341 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 BRD1O95696 1058 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 ADH1AP07327 375 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 NHLH1Q02575 133 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 PPP2R5AQ15172 486 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 NAB2Q15742 525 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 EEF1DP3Q658K8 133 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms