RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SUGCTQ9HAC7 445 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 RNPEPL1Q9HAU8 725 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 EPB41L4AQ9HCS5 686 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ZNF212Q9UDV6 495 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TTLL3Q9Y4R7 772 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 FAM228BP0C875 321 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 PTPN4P29074 926 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 KIAA0408Q6ZU52 694 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 SLC17A8Q8NDX2 589 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 PLEKHG4BQ96PX9 1271 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 RUBCNLQ9H714 662 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 USE1Q9NZ43 259 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 ZNF221Q9UK13 617 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 A8MXQ7 604 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 RNF103O00237 685 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 CCRL2O00421 344 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 CDH16O75309 829 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 HSPD1P10809 573 aaKnown RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 PIK3R1P27986 724 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 NR1H2P55055 460 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 CSE1LP55060 971 aaKnown RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 DNAJC3Q13217 504 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 EGFLAMQ63HQ2 1017 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 SUPT20HQ8NEM7 779 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 NUDT12Q9BQG2 462 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 C6orf62Q9GZU0 229 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 PIGUQ9H490 435 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 RGS12O14924 1447 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 FAM47DPA6NHR8 397 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 ARL4CP56559 192 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 PTPN12Q05209 780 aaKnown RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 LPIN1Q14693 890 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 DGKKQ5KSL6 1271 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 PPP1R2P3Q6NXS1 205 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 SYTL1Q8IYJ3 562 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 C12orf50Q8NA57 414 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 FAM45AQ8TCE6 357 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 DEPDC1BQ8WUY9 529 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 EPAS1Q99814 870 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 TRABDQ9H4I3 376 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 CCDC195A0A1B0GUA6 201 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 SNX17Q15036 470 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 TRIP4Q15650 581 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 CAVIN4Q5BKX8 364 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 APPL2Q8NEU8 664 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 S100ZQ8WXG8 99 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 HSPH1Q92598 858 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 DDX47Q9H0S4 455 aaKnown RBP9.48□□□□□ -0.89
COL6A3-210ENST00000473258 GOLPH3LQ9H4A5 285 aa9.48□□□□□ -0.89
COL6A3-210ENST00000473258 SRRM3A6NNA2 597 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 ETS2P15036 469 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 MAGEA2P43356 314 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 DLG4P78352 724 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 C5orf22Q49AR2 442 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 MTHFD1LQ6UB35 978 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 PIK3AP1Q6ZUJ8 805 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 WDR36Q8NI36 951 aaKnown RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 DHTKD1Q96HY7 919 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 ENTPD7Q9NQZ7 604 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 C20orf96Q9NUD7 363 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 RTEL1Q9NZ71 1219 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SYNGAP1Q96PV0 1343 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TMEM120BA0PK00 339 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 RPS6KA5O75582 802 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SERPING1P05155 500 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 IL12AP29459 219 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 BTN3A2P78410 334 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TYSND1Q2T9J0 566 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 HAUS3Q68CZ6 603 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 UTS2BQ765I0 119 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SETD3Q86TU7 594 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TTC29Q8NA56 475 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 PLEKHA8Q96JA3 519 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SAMSN1Q9NSI8 373 aaKnown RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 IPO11Q9UI26 975 aaKnown RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 ADAM30Q9UKF2 790 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 PPP2R3BQ9Y5P8 575 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TRIM49BA6NDI0 452 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TRIM49D1C9J1S8 452 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 BIRC5O15392 142 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TEX28O15482 410 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 NPR2P20594 1047 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SKIV2L2P42285 1042 aaKnown RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 CPA2P48052 419 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SESN2P58004 480 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 MMRN1Q13201 1228 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SLC5A9Q2M3M2 681 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 GALNT17Q6IS24 598 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 MIGA2Q7L4E1 593 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 THEMISQ8N1K5 641 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TMA16Q96EY4 203 aaKnown RBP9.47□□□□□ -0.89
COL6A3-210ENST00000473258 MMS19Q96T76 1030 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 FAM8A1Q9UBU6 413 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 SLC13A4Q9UKG4 626 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 PALMO75781 387 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TCF3P15923 654 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 TAC1P20366 129 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 RAB25P57735 213 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 EXOC3L4Q17RC7 722 aa9.47□□□□□ -0.89
COL6A3-210ENST00000473258 KNOP1Q1ED39 458 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms