RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 DCDC2BA2VCK2 349 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 CD72P21854 359 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 LMNB2Q03252 620 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 PRKCQQ04759 706 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 LAMTOR4Q0VGL1 99 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 UBXN2BQ14CS0 331 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 SLC44A4Q53GD3 710 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 RNF20Q5VTR2 975 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 FUT10Q6P4F1 479 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 GPR65Q8IYL9 337 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 CNNM3Q8NE01 707 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 TBCKQ8TEA7 893 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 ATRIPQ8WXE1 791 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 TMEM143Q96AN5 459 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 OSBPL6Q9BZF3 934 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 DHX33Q9H6R0 707 aaKnown RBP20.57■□□□□ 0.88
SHH-205ENST00000472308 LTB4R2Q9NPC1 389 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 ZSCAN32Q9NX65 697 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 VPS54Q9P1Q0 977 aa20.57■□□□□ 0.88
SHH-205ENST00000472308 CDV3Q9UKY7 258 aaKnown RBP20.57■□□□□ 0.88
SHH-205ENST00000472308 CCDC196A0A1B0GTZ2 297 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 FAM170BA6NMN3 283 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 PRR5-ARHGAP8B1AHC4 643 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 PSMC5P62195 406 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 ARHGAP8P85298 464 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 USP41Q3LFD5 358 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 GSTCDQ8NEC7 633 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 PSPC1Q8WXF1 523 aaKnown RBP20.56■□□□□ 0.88
SHH-205ENST00000472308 SLC7A3Q8WY07 619 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 FGF13Q92913 245 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 PARD6AQ9NPB6 346 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 WRAP73Q9P2S5 460 aaPredicted RBP20.56■□□□□ 0.88
SHH-205ENST00000472308 FBXW11Q9UKB1 542 aa20.56■□□□□ 0.88
SHH-205ENST00000472308 CYP3A7-CYP3A51PA0A087WV96 503 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 EML1O00423 815 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 TSPAN1O60635 241 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 CYP3A7P24462 503 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 NTRK3Q16288 839 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 TSGA10IPQ3SY00 556 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 RTP2Q5QGT7 225 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 TSSK4Q6SA08 328 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 PRSS55Q6UWB4 352 aaPredicted RBP20.55■□□□□ 0.88
SHH-205ENST00000472308 CCDC148Q8NFR7 591 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 RABGGTAQ92696 567 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 COLEC11Q9BWP8 271 aa20.55■□□□□ 0.88
SHH-205ENST00000472308 BMP2KQ9NSY1 1161 aaPredicted RBP20.55■□□□□ 0.88
SHH-205ENST00000472308 CPA1P15085 419 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 TARSP26639 723 aaKnown RBP20.54■□□□□ 0.88
SHH-205ENST00000472308 ST3GAL2Q16842 350 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 MTSS1LQ765P7 747 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 RNF149Q8NC42 400 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 ITFG1Q8TB96 612 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 CLDN23Q96B33 292 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 CPB2Q96IY4 423 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 KXD1Q9BQD3 176 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 RTKNQ9BST9 563 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 NXF3Q9H4D5 531 aaKnown RBP20.54■□□□□ 0.88
SHH-205ENST00000472308 PRMT8Q9NR22 394 aaPredicted RBP20.54■□□□□ 0.88
SHH-205ENST00000472308 CACNG4Q9UBN1 327 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 ADAM28Q9UKQ2 775 aa20.54■□□□□ 0.88
SHH-205ENST00000472308 TDRD15B5MCY1 1934 aaKnown RBP20.53■□□□□ 0.88
SHH-205ENST00000472308 SHISA7A6NL88 538 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 NR1I2O75469 434 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 ADRB1P08588 477 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 MAGEA9P43362 315 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 CREMQ03060 361 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 RSPO2Q6UXX9 243 aaPredicted RBP20.53■□□□□ 0.88
SHH-205ENST00000472308 SECISBP2LQ93073 1101 aaKnown RBP20.53■□□□□ 0.88
SHH-205ENST00000472308 CEP170P1Q96L14 293 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 APOL6Q9BWW8 343 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 VAV3Q9UKW4 847 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 USP18Q9UMW8 372 aa20.53■□□□□ 0.88
SHH-205ENST00000472308 ERLIN2O94905 339 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 QARSP47897 775 aaKnown RBP20.52■□□□□ 0.88
SHH-205ENST00000472308 FZD5Q13467 585 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 NOTUMQ6P988 496 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 FERMT3Q86UX7 667 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 CCDC51Q96ER9 411 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 CLSTN3Q9BQT9 956 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 PAAF1Q9BRP4 392 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 RNF26Q9BY78 433 aaPredicted RBP20.52■□□□□ 0.88
SHH-205ENST00000472308 CSRNP2Q9H175 543 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 GIT1Q9Y2X7 761 aa20.52■□□□□ 0.88
SHH-205ENST00000472308 CCL16O15467 120 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 C8AP07357 584 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 HNRNPA1P09651 372 aaKnown RBP eCLIP20.51■□□□□ 0.87
SHH-205ENST00000472308 RFC5P40937 340 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 PFKPQ01813 784 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 EMC2Q15006 297 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 AMHR2Q16671 573 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 ZBTB41Q5SVQ8 909 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 TPRG1Q6ZUI0 275 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 NPAS3Q8IXF0 933 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 BRF1Q92994 677 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 SLC26A6Q9BXS9 759 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 PPME1Q9Y570 386 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 CACNA1GO43497 2377 aa20.51■□□□□ 0.87
SHH-205ENST00000472308 M0R2N6 131 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 ADAM12O43184 909 aa20.5■□□□□ 0.87
SHH-205ENST00000472308 SLC37A4O43826 429 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms