RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CTNND1	O60716	968 aa	Known RBP	4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	ITGA10	O75578	1167 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	GUCY1A2	P33402	732 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	IL12RB1	P42701	662 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	FXR1	P51114	621 aa	Known RBP eCLIP	4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	EPHB4	P54760	987 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	RAC3	P60763	192 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	CDC42EP1	Q00587	391 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	DUSP2	Q05923	314 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	IL10RA	Q13651	578 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	ADGRE4P	Q86SQ3	457 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZDHHC14	Q8IZN3	488 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	OR14K1	Q8NGZ2	314 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	NSUN6	Q8TEA1	469 aa	Known RBP	4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	NEIL1	Q96FI4	390 aa	Predicted RBP	4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	LRGUK	Q96M69	825 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	KCNC2	Q96PR1	638 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	FAM193B	Q96PV7	902 aa	Predicted RBP	4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	DMRTA2	Q96SC8	542 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	ACO2	Q99798	780 aa	Known RBP	4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	GOLGA2P5	Q9HBQ8	144 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	PCDHA13	Q9Y5I0	950 aa		4.95	□□□□□ -1.62
PTCD3-209	ENST00000472044	CAND2	O75155	1236 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	ARHGAP29	Q52LW3	1261 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	THEMIS2	Q5TEJ8	643 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	KRT40	Q6A162	431 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	CYB5RL	Q6IPT4	315 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	ARHGEF18	Q6ZSZ5	1173 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	PDZD4	Q76G19	769 aa	Predicted RBP	4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	CHST15	Q7LFX5	561 aa	Predicted RBP	4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	KRTAP19-1	Q8IUB9	90 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	RHOT1	Q8IXI2	618 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	PQLC1	Q8N2U9	271 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	CASKIN2	Q8WXE0	1202 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	BORCS6	Q96GS4	357 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	RPL10L	Q96L21	214 aa	Known RBP	4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	MRGPRX4	Q96LA9	322 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	NELFA	Q9H3P2	528 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	LANCL2	Q9NS86	450 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	CALCOCO1	Q9P1Z2	691 aa		4.94	□□□□□ -1.62
PTCD3-209	ENST00000472044	ADCY6	O43306	1168 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	SASH1	O94885	1247 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	HRG	P04196	525 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZSCAN22	P10073	491 aa	Predicted RBP	4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	CR2	P20023	1033 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	PER3	P56645	1201 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	ATP8B2	P98198	1209 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	DUSP8	Q13202	625 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	SP140	Q13342	867 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	RIN1	Q13671	783 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	RAB39A	Q14964	217 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	ACAP1	Q15027	740 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZFYVE27	Q5T4F4	411 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	SLFN13	Q68D06	897 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZNF572	Q7Z3I7	529 aa	Predicted RBP	4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	DENND1C	Q8IV53	801 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	DRC7	Q8IY82	874 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	GRAMD1C	Q8IYS0	662 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	TRMT2A	Q8IZ69	625 aa	Known RBP	4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	FAM43A	Q8N2R8	423 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	SHCBP1	Q8NEM2	672 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	KAT5	Q92993	513 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	PDCD2L	Q9BRP1	358 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	TMEM60	Q9H2L4	133 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	AGO3	Q9H9G7	860 aa	Known RBP	4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	IL23A	Q9NPF7	189 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	KMT5A	Q9NQR1	393 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	TDP1	Q9NUW8	608 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	USP40	Q9NVE5	1235 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	GABBR1	Q9UBS5	961 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	OAZ3	Q9UMX2	235 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	POLH	Q9Y253	713 aa		4.93	□□□□□ -1.62
PTCD3-209	ENST00000472044	ATRNL1	Q5VV63	1379 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	LAMTOR5	O43504	91 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	TUSC2	O75896	110 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	ARIH2	O95376	493 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	AMY1A	P04745	511 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	ALDH2	P05091	517 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	IL2RB	P14784	551 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	CASR	P41180	1078 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	FLT3LG	P49771	235 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	GZMK	P49863	264 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	HK3	P52790	923 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	NPEPPS	P55786	919 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	MRPL49	Q13405	166 aa	Known RBP	4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	MTM1	Q13496	603 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	GRM3	Q14832	879 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	FAM47A	Q5JRC9	791 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	PRAMEF14	Q5SWL7	426 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	OVCH2	Q7RTZ1	564 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	SRGAP1	Q7Z6B7	1085 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	FRMD5	Q7Z6J6	570 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	GPR135	Q8IZ08	494 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	SYT8	Q8NBV8	401 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	OR5M3	Q8NGP4	307 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	IFI44	Q8TCB0	444 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	LMF1	Q96S06	567 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	UHRF1	Q96T88	793 aa	Predicted RBP	4.92	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms