RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 LINC01553A4QN01 128 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 HNRNPDLO14979 420 aaKnown RBP13.09□□□□□ -0.31
VPS13D-204ENST00000469054 CLDN3O15551 220 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 OFD1O75665 1012 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 PRPF6O94906 941 aaKnown RBP13.09□□□□□ -0.31
VPS13D-204ENST00000469054 ARHGEF15O94989 841 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 RPN1P04843 607 aaKnown RBP13.09□□□□□ -0.31
VPS13D-204ENST00000469054 TAP1Q03518 808 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 KCNA1Q09470 495 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 PSMD2Q13200 908 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 ZNF568Q3ZCX4 644 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 PAN2Q504Q3 1202 aaKnown RBP13.09□□□□□ -0.31
VPS13D-204ENST00000469054 PPP2R2DQ66LE6 453 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 GLB1LQ6UWU2 654 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 STXBP4Q6ZWJ1 553 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 ZBTB33Q86T24 672 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 FIBCD1Q8N539 461 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 HELQQ8TDG4 1101 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 RSPH1Q8WYR4 309 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 CCDC47Q96A33 483 aaKnown RBP13.09□□□□□ -0.31
VPS13D-204ENST00000469054 ACCSQ96QU6 501 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 APOL6Q9BWW8 343 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 CDT1Q9H211 546 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 ZNF576Q9H609 170 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 TMEM206Q9H813 350 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 RSAD1Q9HA92 442 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 SLC39A2Q9NP94 309 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 LMBRD1Q9NUN5 540 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 EXOC1Q9NV70 894 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 SNTG2Q9NY99 539 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 HOOK1Q9UJC3 728 aaKnown RBP13.09□□□□□ -0.31
VPS13D-204ENST00000469054 EXOC7Q9UPT5 735 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 GIT1Q9Y2X7 761 aa13.09□□□□□ -0.31
VPS13D-204ENST00000469054 GOLGA6L22H0YM25 854 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 EIF3DO15371 548 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS13D-204ENST00000469054 MCF2P10911 925 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 AKAP5P24588 427 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 MCL1Q07820 350 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 PNOCQ13519 176 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 ZNF697Q5TEC3 545 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 SLC39A4Q6P5W5 647 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 EPM2AIP1Q7L775 607 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-204ENST00000469054 SYCP3Q8IZU3 236 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 GLIS3Q8NEA6 775 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 ZNF507Q8TCN5 953 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 GAD1Q99259 594 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 TTYH1Q9H313 450 aaPredicted RBP13.08□□□□□ -0.32
VPS13D-204ENST00000469054 SEMA6BQ9H3T3 888 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 ANKFY1Q9P2R3 1169 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 PARP2Q9UGN5 583 aa13.08□□□□□ -0.32
VPS13D-204ENST00000469054 ANKRD63C9JTQ0 380 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 RHOBTB3O94955 611 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 HARSP12081 509 aaKnown RBP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 GRM5P41594 1212 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 MATR3P43243 847 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 STK4Q13043 487 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 KCNB1Q14721 858 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 NOLC1Q14978 699 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 NOMO2Q5JPE7 1267 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 SLFN12LQ6IEE8 588 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 LRRC55Q6ZSA7 311 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 THNSL1Q8IYQ7 743 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 LRRC43Q8N309 656 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 CEP120Q8N960 986 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 SCFD1Q8WVM8 642 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 CLP1Q92989 425 aaKnown RBP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 TGS1Q96RS0 853 aaKnown RBP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 MRPL9Q9BYD2 267 aaKnown RBP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 HAPLN2Q9GZV7 340 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 TYW1Q9NV66 732 aaKnown RBP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 KANSL3Q9P2N6 904 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 INPP5FQ9Y2H2 1132 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 MRPL42Q9Y6G3 142 aaKnown RBP13.07□□□□□ -0.32
VPS13D-204ENST00000469054 STYXL1Q9Y6J8 313 aa13.07□□□□□ -0.32
VPS13D-204ENST00000469054 A0A0B4J269 797 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 ARL5CA6NH57 179 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 TISP43B9A030 160 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 INPPL1O15357 1258 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 RECQL4O94761 1208 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 SMC2O95347 1197 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 LINC00271P0C7V0 271 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 HOXD13P35453 343 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 MLH1P40692 756 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 AFF1P51825 1210 aaKnown RBP13.06□□□□□ -0.32
VPS13D-204ENST00000469054 OSTNP61366 133 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 ERVK-21P61565 698 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 BMT2Q1RMZ1 405 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 KIAA0895Q8NCT3 520 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 SPATA20Q8TB22 786 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 URGCPQ8TCY9 931 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 ERCC4Q92889 916 aaPredicted RBP13.06□□□□□ -0.32
VPS13D-204ENST00000469054 SMARCE1Q969G3 411 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 SAMD11Q96NU1 681 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 ACAP3Q96P50 834 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 GSDMAQ96QA5 445 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 C17orf80Q9BSJ5 609 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 CCDC94Q9BW85 323 aaPredicted RBP13.06□□□□□ -0.32
VPS13D-204ENST00000469054 IKZF4Q9H2S9 585 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 CWH43Q9H720 699 aa13.06□□□□□ -0.32
VPS13D-204ENST00000469054 CERS4Q9HA82 394 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms