RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 STK39Q9UEW8 545 aa27.13■■□□□ 1.93
PTCH1-210ENST00000468211 USP20Q9Y2K6 914 aa27.13■■□□□ 1.93
PTCH1-210ENST00000468211 MTCL1Q9Y4B5 1905 aaKnown RBP27.13■■□□□ 1.93
PTCH1-210ENST00000468211 BRD1O95696 1058 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 ASGR2P07307 311 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 RPA1P27694 616 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 VCPP55072 806 aaKnown RBP27.12■■□□□ 1.93
PTCH1-210ENST00000468211 ECM1Q16610 540 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 KIAA0319Q5VV43 1072 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 CDCA2Q69YH5 1023 aaPredicted RBP27.12■■□□□ 1.93
PTCH1-210ENST00000468211 GPR149Q86SP6 731 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 RABGGTAQ92696 567 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 RPS6KC1Q96S38 1066 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 SFXN1Q9H9B4 322 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 CACNG4Q9UBN1 327 aa27.12■■□□□ 1.93
PTCH1-210ENST00000468211 TEX28O15482 410 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 URODP06132 367 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 TTC38Q5R3I4 469 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 PADI6Q6TGC4 694 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 PPP4R3CPQ6ZMV5 832 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 SUGP1Q8IWZ8 645 aaKnown RBP27.11■■□□□ 1.93
PTCH1-210ENST00000468211 C4orf32Q8N8J7 132 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 MCPH1Q8NEM0 835 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 B3GALT6Q96L58 329 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 FZD8Q9H461 694 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 POLD4Q9HCU8 107 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 LIMD1Q9UGP4 676 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 SORCS3Q9UPU3 1222 aa27.11■■□□□ 1.93
PTCH1-210ENST00000468211 TRIP11Q15643 1979 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 EDN1P05305 212 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 MYBP10242 640 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 ZDHHC14Q8IZN3 488 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 TDRD5Q8NAT2 981 aaKnown RBP27.1■■□□□ 1.93
PTCH1-210ENST00000468211 GPR62Q9BZJ7 368 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 CXCL16Q9H2A7 254 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 PARP2Q9UGN5 583 aa27.1■■□□□ 1.93
PTCH1-210ENST00000468211 CYP11B2P19099 503 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 GLUD2P49448 558 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 ORC2Q13416 577 aaPredicted RBP27.09■■□□□ 1.93
PTCH1-210ENST00000468211 NOSTRINQ8IVI9 506 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 HACE1Q8IYU2 909 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 ZSCAN31Q96LW9 406 aaPredicted RBP27.09■■□□□ 1.93
PTCH1-210ENST00000468211 PDZD7Q9H5P4 517 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 RXFP1Q9HBX9 757 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 MAN1C1Q9NR34 630 aa27.09■■□□□ 1.93
PTCH1-210ENST00000468211 PRMT7Q9NVM4 692 aaPredicted RBP27.09■■□□□ 1.93
PTCH1-210ENST00000468211 ARHGEF35A5YM69 484 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 SPDYE4A6NLX3 237 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 RBM25P49756 843 aaKnown RBP27.08■■□□□ 1.93
PTCH1-210ENST00000468211 HMGN5P82970 282 aaKnown RBP27.08■■□□□ 1.93
PTCH1-210ENST00000468211 DSG1Q02413 1049 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 FAM187BQ17R55 369 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 C8orf34Q49A92 452 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 ERMNQ8TAM6 284 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 PRIMPOLQ96LW4 560 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 PHOX2BQ99453 314 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 PAAF1Q9BRP4 392 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 COLEC11Q9BWP8 271 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 CCDC113Q9H0I3 377 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 CHST7Q9NS84 486 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 USTQ9Y2C2 406 aa27.08■■□□□ 1.93
PTCH1-210ENST00000468211 MRE11P49959 708 aa27.07■■□□□ 1.92
PTCH1-210ENST00000468211 TOB1P50616 345 aaPredicted RBP27.07■■□□□ 1.92
PTCH1-210ENST00000468211 GRIK3Q13003 919 aa27.07■■□□□ 1.92
PTCH1-210ENST00000468211 MTMR3Q13615 1198 aa27.07■■□□□ 1.92
PTCH1-210ENST00000468211 FUT10Q6P4F1 479 aa27.07■■□□□ 1.92
PTCH1-210ENST00000468211 ZBTB8OSQ8IWT0 167 aa27.07■■□□□ 1.92
PTCH1-210ENST00000468211 NR1I2O75469 434 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 ADH1AP07327 375 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 SPATA31D3P0C874 917 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 AVPR2P30518 371 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 CCT6AP40227 531 aaKnown RBP27.06■■□□□ 1.92
PTCH1-210ENST00000468211 FXR2P51116 673 aaKnown RBP eCLIP27.06■■□□□ 1.92
PTCH1-210ENST00000468211 TCF15Q12870 199 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 EEF1DP3Q658K8 133 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 SPATA31D4Q6ZUB0 917 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 UBALD2Q8IYN6 164 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 FAM184AQ8NB25 1140 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 KIFC3Q9BVG8 833 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 SH2B1Q9NRF2 756 aaPredicted RBP27.06■■□□□ 1.92
PTCH1-210ENST00000468211 SNTG2Q9NY99 539 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 SSX2IPQ9Y2D8 614 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 ZMYM2Q9UBW7 1377 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 DOCK6Q96HP0 2047 aa27.06■■□□□ 1.92
PTCH1-210ENST00000468211 PTGESO14684 152 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 PRKCBP05771 671 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 LIG1P18858 919 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 TRAPPC10P48553 1259 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 PRPF4BQ13523 1007 aaKnown RBP27.05■■□□□ 1.92
PTCH1-210ENST00000468211 GNL2Q13823 731 aaKnown RBP27.05■■□□□ 1.92
PTCH1-210ENST00000468211 ADAM28Q9UKQ2 775 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 VWA8A3KMH1 1905 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 DOCK8Q8NF50 2099 aa27.05■■□□□ 1.92
PTCH1-210ENST00000468211 RFPL2O75678 378 aa27.04■■□□□ 1.92
PTCH1-210ENST00000468211 U2AF2P26368 475 aaKnown RBP eCLIP27.04■■□□□ 1.92
PTCH1-210ENST00000468211 NAMPTP43490 491 aa27.04■■□□□ 1.92
PTCH1-210ENST00000468211 C15orf39Q6ZRI6 1047 aa27.04■■□□□ 1.92
PTCH1-210ENST00000468211 CCDC149Q6ZUS6 474 aa27.04■■□□□ 1.92
PTCH1-210ENST00000468211 PALB2Q86YC2 1186 aa27.04■■□□□ 1.92
PTCH1-210ENST00000468211 GLYCTKQ8IVS8 523 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms