RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 EEF1DP3Q658K8 133 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 LRRC55Q6ZSA7 311 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 STXBP4Q6ZWJ1 553 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 RSPH3Q86UC2 560 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 SYCP3Q8IZU3 236 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 NLRP7Q8WX94 980 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 FBXL18Q96ME1 805 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 NAP1L5Q96NT1 182 aaPredicted RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 MAP7D2Q96T17 732 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 PPP1R16BQ96T49 567 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 CBWD1Q9BRT8 395 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 INO80BQ9C086 356 aaPredicted RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 C2orf40Q9H1Z8 148 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 PCIF1Q9H4Z3 704 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 C11orf49Q9H6J7 331 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 AGPAT3Q9NRZ7 376 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 TYW1Q9NV66 732 aaKnown RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 CGNQ9P2M7 1197 aaKnown RBP6.52□□□□□ -1.37
USP39-213ENST00000467885 ST3GAL5Q9UNP4 418 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 TNFSF13BQ9Y275 285 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 NFE2L3Q9Y4A8 694 aa6.52□□□□□ -1.37
USP39-213ENST00000467885 BICDL2A1A5D9 508 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 TRIM43BA6NCK2 446 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 DCDC2CA8MYV0 355 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 K7ENM7 598 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CETN3O15182 167 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 MEFVO15553 781 aaPredicted RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 CALUO43852 315 aaPredicted RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 FAM189A1O60320 539 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 GFRA3O60609 400 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 TSPAN1O60635 241 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 NBNO60934 754 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CAND2O75155 1236 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 TOM1L1O75674 476 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 AKAP3O75969 853 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 NR3C1P04150 777 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 PRKCBP05771 671 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 ADRB2P07550 413 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 ATP1A3P13637 1013 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 GARTP22102 1010 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 ITGB8P26012 769 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 RPL13P26373 211 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 MARSP56192 900 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 MCL1Q07820 350 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 STRN3Q13033 797 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 PRPF4BQ13523 1007 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 DSC3Q14574 896 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 NR1I3Q14994 352 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 PCBP1Q15365 356 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP39-213ENST00000467885 TRIM60Q495X7 471 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 C1orf220Q5T0J3 134 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 UBXN11Q5T124 520 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 SLFN12LQ6IEE8 588 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 FAM228AQ86W67 206 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CDR2LQ86X02 465 aaPredicted RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 ZBTB8OSQ8IWT0 167 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CSGALNACT2Q8N6G5 542 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 AOPEPQ8N6M6 819 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 RDH13Q8NBN7 331 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 GOLGA5Q8TBA6 731 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 NOC3LQ8WTT2 800 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 TRIM43Q96BQ3 446 aaPredicted RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 MFSD14AQ96MC6 490 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CEP63Q96MT8 703 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 OSMRQ99650 979 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 NOC4LQ9BVI4 516 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 TRAIPQ9BWF2 469 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 MRPL4Q9BYD3 311 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 TMX1Q9H3N1 280 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 THAP9Q9H5L6 903 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 ERVK-5Q9HDB9 667 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CHST12Q9NRB3 414 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 PRMT7Q9NVM4 692 aaPredicted RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 LIMA1Q9UHB6 759 aaKnown RBP6.51□□□□□ -1.37
USP39-213ENST00000467885 TBX21Q9UL17 535 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 PADI3Q9ULW8 664 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 EXOC7Q9UPT5 735 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 CTNND2Q9UQB3 1225 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 GINS2Q9Y248 185 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 TRPV2Q9Y5S1 764 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 ZMYM2Q9UBW7 1377 aa6.51□□□□□ -1.37
USP39-213ENST00000467885 UBE4BO95155 1302 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 UMODL1Q5DID0 1318 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 DNAH12Q6ZR08 3092 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 GOLGA8IPA6NC78 632 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 GOLGA8JA6NMD2 632 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 BECN2A8MW95 431 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 ENPP3O14638 875 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 KIAA0355O15063 1070 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 GPR182O15218 404 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 MAPK13O15264 365 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CLDN3O15551 220 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 EXTL3O43909 919 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 PQBP1O60828 265 aaKnown RBP6.5□□□□□ -1.37
USP39-213ENST00000467885 ZNF623O75123 536 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 RPS6KA5O75582 802 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 SELPP16109 830 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 AXLP30530 894 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 CD52P31358 61 aa6.5□□□□□ -1.37
USP39-213ENST00000467885 PSMC2P35998 433 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms