RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 UBALD2Q8IYN6 164 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 WASF1Q92558 559 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 EMILIN2Q9BXX0 1053 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 GPR62Q9BZJ7 368 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 MRPL17Q9NRX2 175 aaKnown RBP22.89■■□□□ 1.25
COL6A1-203ENST00000466285 ANKEF1Q9NU02 776 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 NARSO43776 548 aaKnown RBP22.88■■□□□ 1.25
COL6A1-203ENST00000466285 DGAT1O75907 488 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 RPL17P18621 184 aaKnown RBP22.88■■□□□ 1.25
COL6A1-203ENST00000466285 ATP2B1P20020 1258 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 GLUD2P49448 558 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 MXD4Q14582 209 aaPredicted RBP22.88■■□□□ 1.25
COL6A1-203ENST00000466285 CCDC149Q6ZUS6 474 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 GLYCTKQ8IVS8 523 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 KANSL3Q9P2N6 904 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 USTQ9Y2C2 406 aa22.88■■□□□ 1.25
COL6A1-203ENST00000466285 SPDYE4A6NLX3 237 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 MCM7P33993 719 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 ANKRD1Q15327 319 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 PPFIBP1Q86W92 1011 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 ST13P5Q8NFI4 369 aaPredicted RBP22.87■■□□□ 1.25
COL6A1-203ENST00000466285 RSAD2Q8WXG1 361 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 ZNF707Q96C28 371 aaPredicted RBP22.87■■□□□ 1.25
COL6A1-203ENST00000466285 CCDC51Q96ER9 411 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 BRMS1Q9HCU9 246 aa22.87■■□□□ 1.25
COL6A1-203ENST00000466285 IGFBP6P24592 240 aaPredicted RBP22.86■■□□□ 1.25
COL6A1-203ENST00000466285 AXLP30530 894 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 NEK4P51957 841 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 DSG1Q02413 1049 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 TFDP1Q14186 410 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 CATSPER3Q86XQ3 398 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 CNNM3Q8NE01 707 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 HASPINQ8TF76 798 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 NFKBIZQ9BYH8 718 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 RXFP1Q9HBX9 757 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 POLD4Q9HCU8 107 aa22.86■■□□□ 1.25
COL6A1-203ENST00000466285 CARNS1A5YM72 827 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 LRRIQ4A6NIV6 560 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 GALR2O43603 387 aaPredicted RBP22.85■■□□□ 1.25
COL6A1-203ENST00000466285 NPR3P17342 541 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 POU5F1BQ06416 359 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 CDCA2Q69YH5 1023 aaPredicted RBP22.85■■□□□ 1.25
COL6A1-203ENST00000466285 FUT10Q6P4F1 479 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 SLC27A1Q6PCB7 646 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 ATOH1Q92858 354 aaPredicted RBP22.85■■□□□ 1.25
COL6A1-203ENST00000466285 MYADMQ96S97 322 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 CHST7Q9NS84 486 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 GIT1Q9Y2X7 761 aa22.85■■□□□ 1.25
COL6A1-203ENST00000466285 A0A1B0GUA9 196 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 PTGESO14684 152 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 PI15O43692 258 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 NBR1Q14596 966 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 RTP2Q5QGT7 225 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 PRSS55Q6UWB4 352 aaPredicted RBP22.84■■□□□ 1.25
COL6A1-203ENST00000466285 PALB2Q86YC2 1186 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 CCDC43Q96MW1 224 aaKnown RBP22.84■■□□□ 1.25
COL6A1-203ENST00000466285 PRRX2Q99811 253 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 KIFC3Q9BVG8 833 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 TRIM6Q9C030 488 aaPredicted RBP22.84■■□□□ 1.25
COL6A1-203ENST00000466285 PDZD7Q9H5P4 517 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 KCNK12Q9HB15 430 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 UBN1Q9NPG3 1134 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 MYH15Q9Y2K3 1946 aa22.84■■□□□ 1.25
COL6A1-203ENST00000466285 CLUHO75153 1309 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 CCDC195A0A1B0GUA6 201 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 CASTOR2A6NHX0 329 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 KIF4AO95239 1232 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 GLUD1P00367 558 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 ADH1AP07327 375 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 ECM1Q16610 540 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 EEF1DP3Q658K8 133 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 C15orf39Q6ZRI6 1047 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 CMASQ8NFW8 434 aaPredicted RBP22.83■■□□□ 1.25
COL6A1-203ENST00000466285 CCDC113Q9H0I3 377 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 PARP2Q9UGN5 583 aa22.83■■□□□ 1.25
COL6A1-203ENST00000466285 TGM5O43548 720 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 GRIK3Q13003 919 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 PCBP1Q15365 356 aaKnown RBP eCLIP22.82■■□□□ 1.24
COL6A1-203ENST00000466285 NAB2Q15742 525 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 ASTLQ6HA08 431 aaPredicted RBP22.82■■□□□ 1.24
COL6A1-203ENST00000466285 PPP4R3CPQ6ZMV5 832 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 OTOP3Q7RTS5 596 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 CCDC83Q8IWF9 413 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 PLCD3Q8N3E9 789 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 RIN2Q8WYP3 895 aaPredicted RBP22.82■■□□□ 1.24
COL6A1-203ENST00000466285 SNTG2Q9NY99 539 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 ADAM28Q9UKQ2 775 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 DUSP12Q9UNI6 340 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 NOTCH4Q99466 2003 aa22.82■■□□□ 1.24
COL6A1-203ENST00000466285 ADAM12O43184 909 aa22.81■■□□□ 1.24
COL6A1-203ENST00000466285 GFRA3O60609 400 aa22.81■■□□□ 1.24
COL6A1-203ENST00000466285 ZNF174Q15697 407 aa22.81■■□□□ 1.24
COL6A1-203ENST00000466285 ASCL5Q7RTU5 278 aa22.81■■□□□ 1.24
COL6A1-203ENST00000466285 FLCNQ8NFG4 579 aa22.81■■□□□ 1.24
COL6A1-203ENST00000466285 SMG7Q92540 1137 aaKnown RBP22.81■■□□□ 1.24
COL6A1-203ENST00000466285 FZD8Q9H461 694 aa22.81■■□□□ 1.24
COL6A1-203ENST00000466285 WDR6Q9NNW5 1121 aaKnown RBP22.81■■□□□ 1.24
COL6A1-203ENST00000466285 RECQL4O94761 1208 aa22.8■■□□□ 1.24
COL6A1-203ENST00000466285 TDGQ13569 410 aa22.8■■□□□ 1.24
COL6A1-203ENST00000466285 NOSTRINQ8IVI9 506 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms