RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZSWIM4	Q9H7M6	989 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	IGSF9	Q9P2J2	1179 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	TPCN1	Q9ULQ1	816 aa		12.44	□□□□□ -0.42
PTPN7-204	ENST00000462815	FAM186A	A6NE01	2351 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	MTCL1	Q9Y4B5	1905 aa	Known RBP	12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	COL4A3	Q01955	1670 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	B4GALT5	O43286	388 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	PFKFB2	O60825	505 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	GLUD1	P00367	558 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	NEFL	P07196	543 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	ADH1A	P07327	375 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	GLRA2	P23416	452 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	OR1G1	P47890	313 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	AK2	P54819	239 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	NR5A1	Q13285	461 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	ANGPT1	Q15389	498 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	XKR9	Q5GH70	373 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	NOTUM	Q6P988	496 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	SLC44A3	Q8N4M1	653 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	DTWD2	Q8NBA8	298 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	HDAC7	Q8WUI4	952 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	FAM193B	Q96PV7	902 aa	Predicted RBP	12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	EIF2AK1	Q9BQI3	630 aa	Known RBP	12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	MFSD1	Q9H3U5	465 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	DLGAP2	Q9P1A6	1054 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	WNT16	Q9UBV4	365 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	GIT1	Q9Y2X7	761 aa		12.43	□□□□□ -0.42
PTPN7-204	ENST00000462815	ANHX	E9PGG2	379 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	TGM5	O43548	720 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	ERLIN2	O94905	339 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	RARRES1	P49788	294 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	MXD4	Q14582	209 aa	Predicted RBP	12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	NAB2	Q15742	525 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	FUT10	Q6P4F1	479 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	CPLX2	Q6PUV4	134 aa	Known RBP	12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	OTUD6A	Q7L8S5	288 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	RTP3	Q9BQQ7	232 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	PAAF1	Q9BRP4	392 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	NT5C3A	Q9H0P0	336 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	CXCL16	Q9H2A7	254 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	SLK	Q9H2G2	1235 aa	Predicted RBP	12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	PDRG1	Q9NUG6	133 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	FNIP2	Q9P278	1114 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	CACNG4	Q9UBN1	327 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815	SSX2IP	Q9Y2D8	614 aa		12.42	□□□□□ -0.42
PTPN7-204	ENST00000462815		A0A1B0GUA9	196 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	TTLL13P	A6NNM8	815 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	DGAT1	O75907	488 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	CFH	P08603	1231 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	SPATA31D3	P0C874	917 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	MYB	P10242	640 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	SRF	P11831	508 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	AKAP5	P24588	427 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	HTR4	Q13639	388 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	RTP2	Q5QGT7	225 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	ERICH6B	Q5W0A0	696 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	CDCA2	Q69YH5	1023 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	PPP4R3CP	Q6ZMV5	832 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	SPATA31D4	Q6ZUB0	917 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	CDR2L	Q86X02	465 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	TPH2	Q8IWU9	490 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	SLFN12	Q8IYM2	578 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	SMG7	Q92540	1137 aa	Known RBP	12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	NKD2	Q969F2	451 aa	Predicted RBP	12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	MTMR9	Q96QG7	549 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	NAP1L4	Q99733	375 aa	Known RBP	12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	PLEKHA4	Q9H4M7	779 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	ANKEF1	Q9NU02	776 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	ZDHHC7	Q9NXF8	308 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	ADAM28	Q9UKQ2	775 aa		12.41	□□□□□ -0.42
PTPN7-204	ENST00000462815	INO80B-WBP1	J3KQ70	363 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	PTGES	O14684	152 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	CDKL5	O76039	1030 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	LARGE1	O95461	756 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	EDN1	P05305	212 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	SPATA31C1	P0DKV0	1188 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	LAMP2	P13473	410 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	RPL17	P18621	184 aa	Known RBP	12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	GRIK3	Q13003	919 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	SLC27A1	Q6PCB7	646 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	PALB2	Q86YC2	1186 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	ADSSL1	Q8N142	457 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	RABGGTA	Q92696	567 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	NXPE3	Q969Y0	559 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	APOL6	Q9BWW8	343 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	PRKD2	Q9BZL6	878 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	FBXW11	Q9UKB1	542 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	VWA8	A3KMH1	1905 aa		12.4	□□□□□ -0.42
PTPN7-204	ENST00000462815	FANCM	Q8IYD8	2048 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815		A0A087WWV3	80 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	SPDYE4	A6NLX3	237 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	ZMYND10	O75800	440 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	KIF4A	O95239	1232 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	NPTXR	O95502	500 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	GLUL	P15104	373 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	GBP2	P32456	591 aa	Predicted RBP	12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	FOXK2	Q01167	660 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	ST3GAL1	Q11201	340 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	TFDP1	Q14186	410 aa		12.39	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms