RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PAF1Q8N7H5 531 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 BTBD6Q96KE9 485 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 TRIM6Q9C030 488 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 JPH1Q9HDC5 661 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 NUP98P52948 1817 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 LAMB4A4D0S4 1761 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 ICAM1P05362 532 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SPATA31C1P0DKV0 1188 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 PTGER2P43116 358 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 EIF3BP55884 814 aaKnown RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 KCTD2Q14681 263 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SLMAPQ14BN4 828 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 HP1BP3Q5SSJ5 553 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 PPP1R21Q6ZMI0 780 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 CTAGE3PQ8IX95 158 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SLC20A1Q8WUM9 679 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 TRIM11Q96F44 468 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 PSMD1Q99460 953 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 SLC9A2Q9UBY0 812 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 AGO2Q9UKV8 859 aaKnown RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 TTC7AQ9ULT0 858 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 DIS3Q9Y2L1 958 aaKnown RBP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 DDX3XO00571 662 aaKnown RBP eCLIP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 NKRFO15226 690 aaKnown RBP eCLIP12.45□□□□□ -0.42
NPHP4-204ENST00000460696 FAM153BP0C7A2 387 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 FGFR4P22455 802 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 FAM153CQ494X1 144 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 GPD1LQ8N335 351 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 FAM153AQ9UHL3 310 aa12.45□□□□□ -0.42
NPHP4-204ENST00000460696 PPP1R37O75864 691 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 RNF8O76064 485 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 EGFRP00533 1210 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 EZRP15311 586 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 RFX1P22670 979 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 RPS12P25398 132 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 POLR2BP30876 1174 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CHRNA3P32297 505 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 HADHQ16836 314 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 DEFB115Q30KQ5 88 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 KIAA1755Q5JYT7 1200 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 SMC1BQ8NDV3 1235 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 FBF1Q8TES7 1133 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 FAM118BQ9BPY3 351 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 WDR18Q9BV38 432 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 RBAKQ9NYW8 714 aaPredicted RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 SUCLA2Q9P2R7 463 aaPredicted RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 MARF1Q9Y4F3 1742 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 DUOX1Q9NRD9 1551 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 PPP2R2AP63151 447 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CBWD6Q4V339 395 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CBWD3Q5JTY5 395 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CBWD5Q5RIA9 395 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CHADLQ6NUI6 762 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CCDC197Q8NCU1 140 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 GDAP1Q8TB36 358 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 ETNPPLQ8TBG4 499 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 ISCUQ9H1K1 167 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 KCTD10Q9H3F6 313 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 ACAD9Q9H845 621 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 ZNF302Q9NR11 478 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 STK38LQ9Y2H1 464 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 YDJCA8MPS7 323 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 TNPO2O14787 897 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 SGPL1O95470 568 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 ANXA13P27216 316 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 YARSP54577 528 aaKnown RBP12.44□□□□□ -0.42
NPHP4-204ENST00000460696 LRRC31Q6UY01 552 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 PALM2Q8IXS6 379 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CALN1Q9BXU9 219 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 TTYH3Q9C0H2 523 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 HOXC10Q9NYD6 342 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 SALL4Q9UJQ4 1053 aa12.44□□□□□ -0.42
NPHP4-204ENST00000460696 CASZ1Q86V15 1759 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 PFASO15067 1338 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 EIF3HO15372 352 aaKnown RBP eCLIP12.43□□□□□ -0.42
NPHP4-204ENST00000460696 PJA2O43164 708 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 TLR2O60603 784 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 CLTAP09496 248 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 CYP2B6P20813 491 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 GNA15P30679 374 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 ALDH3A1P30838 453 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 HNRNPH3P31942 346 aaKnown RBP12.43□□□□□ -0.42
NPHP4-204ENST00000460696 SPATS2Q86XZ4 545 aaKnown RBP12.43□□□□□ -0.42
NPHP4-204ENST00000460696 DNAJC18Q9H819 358 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 KLHL11Q9NVR0 708 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 USP20Q9Y2K6 914 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 PKD1L3Q7Z443 1732 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 MMEP08473 750 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 OSBPP22059 807 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 HSD17B3P37058 310 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 MAGEA9P43362 315 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 TMED2Q15363 201 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 SLFN12LQ6IEE8 588 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 CEP128Q6ZU80 1094 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 TADA2BQ86TJ2 420 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 NLRP14Q86W24 1093 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 TSEN2Q8NCE0 465 aaKnown RBP12.43□□□□□ -0.42
NPHP4-204ENST00000460696 ELAC2Q9BQ52 826 aaKnown RBP12.43□□□□□ -0.42
NPHP4-204ENST00000460696 FERMT1Q9BQL6 677 aa12.43□□□□□ -0.42
NPHP4-204ENST00000460696 WNT8AQ9H1J5 351 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms