RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 ALS2CLQ60I27 953 aa12.72□□□□□ -0.37
SYNE2-207ENST00000458046 ZNF571Q7Z3V5 609 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-207ENST00000458046 KIAA0825Q8IV33 1275 aa12.72□□□□□ -0.37
SYNE2-207ENST00000458046 CASKIN2Q8WXE0 1202 aa12.72□□□□□ -0.37
SYNE2-207ENST00000458046 RUBCNQ92622 972 aa12.72□□□□□ -0.37
SYNE2-207ENST00000458046 GDF3Q9NR23 364 aa12.72□□□□□ -0.37
SYNE2-207ENST00000458046 PCDHGC5Q9Y5F6 944 aa12.72□□□□□ -0.37
SYNE2-207ENST00000458046 HNRNPCP07910 306 aaKnown RBP eCLIP12.71□□□□□ -0.37
SYNE2-207ENST00000458046 USP11P51784 963 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 DDR1Q08345 913 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 CFAP58Q5T655 872 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 ARHGAP27Q6ZUM4 889 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 IRF2BP2Q7Z5L9 587 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 SFR1Q86XK3 245 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 MS4A4AQ96JQ5 239 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 REEP2Q9BRK0 252 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 RNF14Q9UBS8 474 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 ARMCX3Q9UH62 379 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-207ENST00000458046 DNM3Q9UQ16 869 aa12.71□□□□□ -0.37
SYNE2-207ENST00000458046 SFI1A8K8P3 1242 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 RSPH10B2B2RC85 870 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 MEIS2O14770 477 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 PPEF1O14829 653 aaPredicted RBP12.71□□□□□ -0.38
SYNE2-207ENST00000458046 CLIC2O15247 247 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 CTSHP09668 335 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 RSPH10BP0C881 870 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 UCHL3P15374 230 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 HOXD10P28358 340 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 HOXA7P31268 230 aaPredicted RBP12.71□□□□□ -0.38
SYNE2-207ENST00000458046 STIP1P31948 543 aaKnown RBP12.71□□□□□ -0.38
SYNE2-207ENST00000458046 HOXD13P35453 343 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 PPARDQ03181 441 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 NNTQ13423 1086 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 SLFN13Q68D06 897 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 APOBEC3HQ6NTF7 200 aaKnown RBP12.71□□□□□ -0.38
SYNE2-207ENST00000458046 SLC30A10Q6XR72 485 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.71□□□□□ -0.38
SYNE2-207ENST00000458046 COA1Q9GZY4 146 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 NMRK2Q9NPI5 230 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 KCNQ5Q9NR82 932 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 FBXO10Q9UK96 956 aa12.71□□□□□ -0.38
SYNE2-207ENST00000458046 G3V3G9 751 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 TOR1BO14657 336 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 RAD51CO43502 376 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 CNGA1P29973 690 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 HOXA10P31260 410 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 CORO7P57737 925 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 ROR1Q01973 937 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 IKQ13123 557 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 PDCLQ13371 301 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 RPS6KA1Q15418 735 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 EXOC3L4Q17RC7 722 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 KNOP1Q1ED39 458 aaKnown RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 GJB7Q6PEY0 223 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 STON2Q8WXE9 905 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 EMID1Q96A84 441 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 INPP4AQ96PE3 977 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 ASPSCR1Q9BZE9 553 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 IKZF4Q9H2S9 585 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 DNAJC18Q9H819 358 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 KLRG2A4D1S0 409 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 ZNF233A6NK53 670 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 AKAP3O75969 853 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 AFPP02771 609 aaKnown RBP12.7□□□□□ -0.38
SYNE2-207ENST00000458046 SPATA31C1P0DKV0 1188 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 PON1P27169 355 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 TNFRSF8P28908 595 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 ETFBP38117 255 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 MAGEA9P43362 315 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 MAPK8P45983 427 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 GJA8P48165 433 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 CASP4P49662 377 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 PAK2Q13177 524 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 SLMAPQ14BN4 828 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 EDRF1Q3B7T1 1238 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 SLFN12Q8IYM2 578 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 SLC17A8Q8NDX2 589 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 CYP2W1Q8TAV3 490 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 CRAMP1Q96RY5 1269 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 SAMM50Q9Y512 469 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 N6AMT1Q9Y5N5 214 aa12.7□□□□□ -0.38
SYNE2-207ENST00000458046 FRMD3A2A2Y4 597 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 FAM86B1E9PN63 330 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 EIF3HO15372 352 aaKnown RBP eCLIP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 CEP104O60308 925 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 ZEB2O60315 1214 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 LGR5O75473 907 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 FAM86B2P0C5J1 330 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 SPIRE1Q08AE8 756 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 DPY19L2P1Q6NXN4 242 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 LLGL2Q6P1M3 1020 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 SP8Q8IXZ3 490 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 IQCKQ8N0W5 287 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 UBR7Q8N806 425 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 USP38Q8NB14 1042 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 ETNPPLQ8TBG4 499 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 TEKT1Q969V4 418 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 AJAP1Q9UKB5 411 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 MYH7BA7E2Y1 1941 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 GRIN2DO15399 1336 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms