RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 LIG1P18858 919 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 GRIN1Q05586 938 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 PCBP1Q15365 356 aaKnown RBP eCLIP18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 SMAD2Q15796 467 aaKnown RBP18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 RESP18Q5W5W9 173 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 CCDC73Q6ZRK6 1079 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 CABP7Q86V35 215 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 VPS52Q8N1B4 723 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 CNNM3Q8NE01 707 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 IGSF21Q96ID5 467 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 CDK5RAP3Q96JB5 506 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 FAM193BQ96PV7 902 aaPredicted RBP18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 GAD1Q99259 594 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 CDCA3Q99618 268 aaPredicted RBP18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 APOL5Q9BWW9 433 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 NFKBIZQ9BYH8 718 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 TRIM6Q9C030 488 aaPredicted RBP18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 CCSER1Q9C0I3 900 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 MIOSQ9NXC5 875 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 USP20Q9Y2K6 914 aa18.79■□□□□ 0.6
PRPF40A-204ENST00000450303 C2orf71A6NGG8 1288 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 TTLL13PA6NNM8 815 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 MUTP22033 750 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 AKAP5P24588 427 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 MLH1P40692 756 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 ZP2Q05996 745 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 SMC1AQ14683 1233 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 ZRSR1Q15695 479 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 SPECC1Q5M775 1068 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 SHC4Q6S5L8 630 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 ZBTB8OSQ8IWT0 167 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 KCTD17Q8N5Z5 321 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 MRPL43Q8N983 215 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 FSIP1Q8NA03 581 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 RSPH1Q8WYR4 309 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 CCDC51Q96ER9 411 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 NT5C3AQ9H0P0 336 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 NXF3Q9H4D5 531 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 LMBRD1Q9NUN5 540 aa18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 TDRD15B5MCY1 1934 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-204ENST00000450303 ARL5CA6NH57 179 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 EYA4O95677 639 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 ALDH2P05091 517 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 COASYQ13057 564 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 SLC27A1Q6PCB7 646 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 ADHFE1Q8IWW8 467 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 EPSTI1Q96J88 318 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 ZFP42Q96MM3 310 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 KIFC3Q9BVG8 833 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 VN1R3Q9BXE9 311 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 UBN1Q9NPG3 1134 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 PRMT7Q9NVM4 692 aaPredicted RBP18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 KLK14Q9P0G3 267 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 KANSL3Q9P2N6 904 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 PRKAG3Q9UGI9 489 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 FAN1Q9Y2M0 1017 aa18.77■□□□□ 0.6
PRPF40A-204ENST00000450303 A0A1B0GUA9 196 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 NRP1O14786 923 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 GADD45BO75293 160 aaPredicted RBP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 SSBP05455 408 aaKnown RBP eCLIP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 SCNN1GP51170 649 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 KCNC3Q14003 757 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 TMEM132AQ24JP5 1023 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 CDCA2Q69YH5 1023 aaPredicted RBP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 KCNK18Q7Z418 384 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 DDX53Q86TM3 631 aaKnown RBP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 SMRP1Q8NCR6 262 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 DEPTORQ8TB45 409 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 PLIN2Q99541 437 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 MMTAG2Q9BU76 263 aaKnown RBP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 ZBP1Q9H171 429 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 FZD8Q9H461 694 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 PARP2Q9UGN5 583 aa18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 PRG3Q9Y2Y8 225 aaPredicted RBP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 USP15Q9Y4E8 981 aaPredicted RBP18.76■□□□□ 0.59
PRPF40A-204ENST00000450303 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 A0A1B0GVL5 298 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 C19orf67A6NJJ6 358 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 CLASP2O75122 1294 aaKnown RBP18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 MBD3O95983 291 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 EDN1P05305 212 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 PRKCBP05771 671 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 PFKFB1P16118 471 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 SYKP43405 635 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 NAMPTP43490 491 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 OR1G1P47890 313 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 RRAGBQ5VZM2 374 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 ANKRD54Q6NXT1 300 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 PPP4R3CPQ6ZMV5 832 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 CCDC34Q96HJ3 373 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 TMEM175Q9BSA9 504 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 C2orf40Q9H1Z8 148 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 USP25Q9UHP3 1055 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 RAPGEFL1Q9UHV5 662 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 KCNH3Q9ULD8 1083 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 DNM3Q9UQ16 869 aa18.75■□□□□ 0.59
PRPF40A-204ENST00000450303 FAM237AA0A1B0GTK4 181 aa18.74■□□□□ 0.59
PRPF40A-204ENST00000450303 FAM86C2PA6NEL3 165 aa18.74■□□□□ 0.59
PRPF40A-204ENST00000450303 PI4K2BG5E9Z4 385 aa18.74■□□□□ 0.59
PRPF40A-204ENST00000450303 CTSAP10619 480 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms